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Impact of rescanning and repositioning on radiomic features employing a multi-object phantom in magnetic resonance imaging
Our purpose was to analyze the robustness and reproducibility of magnetic resonance imaging (MRI) radiomic features. We constructed a multi-object fruit phantom to perform MRI acquisition as scan-rescan using a 3 Tesla MRI scanner. We applied T2-weighted (T2w) half-Fourier acquisition single-shot tu...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8271025/ https://www.ncbi.nlm.nih.gov/pubmed/34244594 http://dx.doi.org/10.1038/s41598-021-93756-x |
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author | Bernatz, Simon Zhdanovich, Yauheniya Ackermann, Jörg Koch, Ina Wild, Peter J. dos Santos, Daniel Pinto Vogl, Thomas J. Kaltenbach, Benjamin Rosbach, Nicolas |
author_facet | Bernatz, Simon Zhdanovich, Yauheniya Ackermann, Jörg Koch, Ina Wild, Peter J. dos Santos, Daniel Pinto Vogl, Thomas J. Kaltenbach, Benjamin Rosbach, Nicolas |
author_sort | Bernatz, Simon |
collection | PubMed |
description | Our purpose was to analyze the robustness and reproducibility of magnetic resonance imaging (MRI) radiomic features. We constructed a multi-object fruit phantom to perform MRI acquisition as scan-rescan using a 3 Tesla MRI scanner. We applied T2-weighted (T2w) half-Fourier acquisition single-shot turbo spin-echo (HASTE), T2w turbo spin-echo (TSE), T2w fluid-attenuated inversion recovery (FLAIR), T2 map and T1-weighted (T1w) TSE. Images were resampled to isotropic voxels. Fruits were segmented. The workflow was repeated by a second reader and the first reader after a pause of one month. We applied PyRadiomics to extract 107 radiomic features per fruit and sequence from seven feature classes. We calculated concordance correlation coefficients (CCC) and dynamic range (DR) to obtain measurements of feature robustness. Intraclass correlation coefficient (ICC) was calculated to assess intra- and inter-observer reproducibility. We calculated Gini scores to test the pairwise discriminative power specific for the features and MRI sequences. We depict Bland Altmann plots of features with top discriminative power (Mann–Whitney U test). Shape features were the most robust feature class. T2 map was the most robust imaging technique (robust features (rf), n = 84). HASTE sequence led to the least amount of rf (n = 20). Intra-observer ICC was excellent (≥ 0.75) for nearly all features (max–min; 99.1–97.2%). Deterioration of ICC values was seen in the inter-observer analyses (max–min; 88.7–81.1%). Complete robustness across all sequences was found for 8 features. Shape features and T2 map yielded the highest pairwise discriminative performance. Radiomics validity depends on the MRI sequence and feature class. T2 map seems to be the most promising imaging technique with the highest feature robustness, high intra-/inter-observer reproducibility and most promising discriminative power. |
format | Online Article Text |
id | pubmed-8271025 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-82710252021-07-13 Impact of rescanning and repositioning on radiomic features employing a multi-object phantom in magnetic resonance imaging Bernatz, Simon Zhdanovich, Yauheniya Ackermann, Jörg Koch, Ina Wild, Peter J. dos Santos, Daniel Pinto Vogl, Thomas J. Kaltenbach, Benjamin Rosbach, Nicolas Sci Rep Article Our purpose was to analyze the robustness and reproducibility of magnetic resonance imaging (MRI) radiomic features. We constructed a multi-object fruit phantom to perform MRI acquisition as scan-rescan using a 3 Tesla MRI scanner. We applied T2-weighted (T2w) half-Fourier acquisition single-shot turbo spin-echo (HASTE), T2w turbo spin-echo (TSE), T2w fluid-attenuated inversion recovery (FLAIR), T2 map and T1-weighted (T1w) TSE. Images were resampled to isotropic voxels. Fruits were segmented. The workflow was repeated by a second reader and the first reader after a pause of one month. We applied PyRadiomics to extract 107 radiomic features per fruit and sequence from seven feature classes. We calculated concordance correlation coefficients (CCC) and dynamic range (DR) to obtain measurements of feature robustness. Intraclass correlation coefficient (ICC) was calculated to assess intra- and inter-observer reproducibility. We calculated Gini scores to test the pairwise discriminative power specific for the features and MRI sequences. We depict Bland Altmann plots of features with top discriminative power (Mann–Whitney U test). Shape features were the most robust feature class. T2 map was the most robust imaging technique (robust features (rf), n = 84). HASTE sequence led to the least amount of rf (n = 20). Intra-observer ICC was excellent (≥ 0.75) for nearly all features (max–min; 99.1–97.2%). Deterioration of ICC values was seen in the inter-observer analyses (max–min; 88.7–81.1%). Complete robustness across all sequences was found for 8 features. Shape features and T2 map yielded the highest pairwise discriminative performance. Radiomics validity depends on the MRI sequence and feature class. T2 map seems to be the most promising imaging technique with the highest feature robustness, high intra-/inter-observer reproducibility and most promising discriminative power. Nature Publishing Group UK 2021-07-09 /pmc/articles/PMC8271025/ /pubmed/34244594 http://dx.doi.org/10.1038/s41598-021-93756-x Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Bernatz, Simon Zhdanovich, Yauheniya Ackermann, Jörg Koch, Ina Wild, Peter J. dos Santos, Daniel Pinto Vogl, Thomas J. Kaltenbach, Benjamin Rosbach, Nicolas Impact of rescanning and repositioning on radiomic features employing a multi-object phantom in magnetic resonance imaging |
title | Impact of rescanning and repositioning on radiomic features employing a multi-object phantom in magnetic resonance imaging |
title_full | Impact of rescanning and repositioning on radiomic features employing a multi-object phantom in magnetic resonance imaging |
title_fullStr | Impact of rescanning and repositioning on radiomic features employing a multi-object phantom in magnetic resonance imaging |
title_full_unstemmed | Impact of rescanning and repositioning on radiomic features employing a multi-object phantom in magnetic resonance imaging |
title_short | Impact of rescanning and repositioning on radiomic features employing a multi-object phantom in magnetic resonance imaging |
title_sort | impact of rescanning and repositioning on radiomic features employing a multi-object phantom in magnetic resonance imaging |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8271025/ https://www.ncbi.nlm.nih.gov/pubmed/34244594 http://dx.doi.org/10.1038/s41598-021-93756-x |
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