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Standardization of assay representation in the Ontology for Biomedical Investigations
The Ontology for Biomedical Investigations (OBI) underwent a focused review of assay term annotations, logic and hierarchy with a goal to improve and standardize these terms. As a result, inconsistencies in W3C Web Ontology Language (OWL) expressions were identified and corrected, and additionally,...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Oxford University Press
2021
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8271124/ https://www.ncbi.nlm.nih.gov/pubmed/34244718 http://dx.doi.org/10.1093/database/baab040 |
| _version_ | 1783720934034636800 |
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| author | Vita, Randi Zheng, Jie Jackson, Rebecca Dooley, Damion Overton, James A Miller, Mark A Berrios, Daniel C Scheuermann, Richard H He, Yongqun McGinty, Hande Küçük Brochhausen, Mathias Lin, Aisyah Yu Jain, Sagar B Chibucos, Marcus C Judkins, John Giglio, Michelle G Feng, Irene Y Burns, Gully Brush, Matthew H Peters, Bjoern Stoeckert Jr, Christian J |
| author_facet | Vita, Randi Zheng, Jie Jackson, Rebecca Dooley, Damion Overton, James A Miller, Mark A Berrios, Daniel C Scheuermann, Richard H He, Yongqun McGinty, Hande Küçük Brochhausen, Mathias Lin, Aisyah Yu Jain, Sagar B Chibucos, Marcus C Judkins, John Giglio, Michelle G Feng, Irene Y Burns, Gully Brush, Matthew H Peters, Bjoern Stoeckert Jr, Christian J |
| author_sort | Vita, Randi |
| collection | PubMed |
| description | The Ontology for Biomedical Investigations (OBI) underwent a focused review of assay term annotations, logic and hierarchy with a goal to improve and standardize these terms. As a result, inconsistencies in W3C Web Ontology Language (OWL) expressions were identified and corrected, and additionally, standardized design patterns and a formalized template to maintain them were developed. We describe here this informative and productive process to describe the specific benefits and obstacles for OBI and the universal lessons for similar projects. |
| format | Online Article Text |
| id | pubmed-8271124 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2021 |
| publisher | Oxford University Press |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-82711242021-07-12 Standardization of assay representation in the Ontology for Biomedical Investigations Vita, Randi Zheng, Jie Jackson, Rebecca Dooley, Damion Overton, James A Miller, Mark A Berrios, Daniel C Scheuermann, Richard H He, Yongqun McGinty, Hande Küçük Brochhausen, Mathias Lin, Aisyah Yu Jain, Sagar B Chibucos, Marcus C Judkins, John Giglio, Michelle G Feng, Irene Y Burns, Gully Brush, Matthew H Peters, Bjoern Stoeckert Jr, Christian J Database (Oxford) Technical Report The Ontology for Biomedical Investigations (OBI) underwent a focused review of assay term annotations, logic and hierarchy with a goal to improve and standardize these terms. As a result, inconsistencies in W3C Web Ontology Language (OWL) expressions were identified and corrected, and additionally, standardized design patterns and a formalized template to maintain them were developed. We describe here this informative and productive process to describe the specific benefits and obstacles for OBI and the universal lessons for similar projects. Oxford University Press 2021-07-09 /pmc/articles/PMC8271124/ /pubmed/34244718 http://dx.doi.org/10.1093/database/baab040 Text en © The Author(s) 2021. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
| spellingShingle | Technical Report Vita, Randi Zheng, Jie Jackson, Rebecca Dooley, Damion Overton, James A Miller, Mark A Berrios, Daniel C Scheuermann, Richard H He, Yongqun McGinty, Hande Küçük Brochhausen, Mathias Lin, Aisyah Yu Jain, Sagar B Chibucos, Marcus C Judkins, John Giglio, Michelle G Feng, Irene Y Burns, Gully Brush, Matthew H Peters, Bjoern Stoeckert Jr, Christian J Standardization of assay representation in the Ontology for Biomedical Investigations |
| title | Standardization of assay representation in the Ontology for Biomedical Investigations |
| title_full | Standardization of assay representation in the Ontology for Biomedical Investigations |
| title_fullStr | Standardization of assay representation in the Ontology for Biomedical Investigations |
| title_full_unstemmed | Standardization of assay representation in the Ontology for Biomedical Investigations |
| title_short | Standardization of assay representation in the Ontology for Biomedical Investigations |
| title_sort | standardization of assay representation in the ontology for biomedical investigations |
| topic | Technical Report |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8271124/ https://www.ncbi.nlm.nih.gov/pubmed/34244718 http://dx.doi.org/10.1093/database/baab040 |
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