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Statistical analysis of ENDOR spectra
Electron–nuclear double resonance (ENDOR) measures the hyperfine interaction of magnetic nuclei with paramagnetic centers and is hence a powerful tool for spectroscopic investigations extending from biophysics to material science. Progress in microwave technology and the recent availability of comme...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
National Academy of Sciences
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8271618/ https://www.ncbi.nlm.nih.gov/pubmed/34215694 http://dx.doi.org/10.1073/pnas.2023615118 |
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author | Pokern, Yvo Eltzner, Benjamin Huckemann, Stephan F. Beeken, Clemens Stubbe, JoAnne Tkach, Igor Bennati, Marina Hiller, Markus |
author_facet | Pokern, Yvo Eltzner, Benjamin Huckemann, Stephan F. Beeken, Clemens Stubbe, JoAnne Tkach, Igor Bennati, Marina Hiller, Markus |
author_sort | Pokern, Yvo |
collection | PubMed |
description | Electron–nuclear double resonance (ENDOR) measures the hyperfine interaction of magnetic nuclei with paramagnetic centers and is hence a powerful tool for spectroscopic investigations extending from biophysics to material science. Progress in microwave technology and the recent availability of commercial electron paramagnetic resonance (EPR) spectrometers up to an electron Larmor frequency of 263 GHz now open the opportunity for a more quantitative spectral analysis. Using representative spectra of a prototype amino acid radical in a biologically relevant enzyme, the [Formula: see text] in Escherichia coli ribonucleotide reductase, we developed a statistical model for ENDOR data and conducted statistical inference on the spectra including uncertainty estimation and hypothesis testing. Our approach in conjunction with (1)H/(2)H isotopic labeling of [Formula: see text] in the protein unambiguously established new unexpected spectral contributions. Density functional theory (DFT) calculations and ENDOR spectral simulations indicated that these features result from the beta-methylene hyperfine coupling and are caused by a distribution of molecular conformations, likely important for the biological function of this essential radical. The results demonstrate that model-based statistical analysis in combination with state-of-the-art spectroscopy accesses information hitherto beyond standard approaches. |
format | Online Article Text |
id | pubmed-8271618 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | National Academy of Sciences |
record_format | MEDLINE/PubMed |
spelling | pubmed-82716182021-07-16 Statistical analysis of ENDOR spectra Pokern, Yvo Eltzner, Benjamin Huckemann, Stephan F. Beeken, Clemens Stubbe, JoAnne Tkach, Igor Bennati, Marina Hiller, Markus Proc Natl Acad Sci U S A Physical Sciences Electron–nuclear double resonance (ENDOR) measures the hyperfine interaction of magnetic nuclei with paramagnetic centers and is hence a powerful tool for spectroscopic investigations extending from biophysics to material science. Progress in microwave technology and the recent availability of commercial electron paramagnetic resonance (EPR) spectrometers up to an electron Larmor frequency of 263 GHz now open the opportunity for a more quantitative spectral analysis. Using representative spectra of a prototype amino acid radical in a biologically relevant enzyme, the [Formula: see text] in Escherichia coli ribonucleotide reductase, we developed a statistical model for ENDOR data and conducted statistical inference on the spectra including uncertainty estimation and hypothesis testing. Our approach in conjunction with (1)H/(2)H isotopic labeling of [Formula: see text] in the protein unambiguously established new unexpected spectral contributions. Density functional theory (DFT) calculations and ENDOR spectral simulations indicated that these features result from the beta-methylene hyperfine coupling and are caused by a distribution of molecular conformations, likely important for the biological function of this essential radical. The results demonstrate that model-based statistical analysis in combination with state-of-the-art spectroscopy accesses information hitherto beyond standard approaches. National Academy of Sciences 2021-07-06 2021-07-02 /pmc/articles/PMC8271618/ /pubmed/34215694 http://dx.doi.org/10.1073/pnas.2023615118 Text en Copyright © 2021 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) . |
spellingShingle | Physical Sciences Pokern, Yvo Eltzner, Benjamin Huckemann, Stephan F. Beeken, Clemens Stubbe, JoAnne Tkach, Igor Bennati, Marina Hiller, Markus Statistical analysis of ENDOR spectra |
title | Statistical analysis of ENDOR spectra |
title_full | Statistical analysis of ENDOR spectra |
title_fullStr | Statistical analysis of ENDOR spectra |
title_full_unstemmed | Statistical analysis of ENDOR spectra |
title_short | Statistical analysis of ENDOR spectra |
title_sort | statistical analysis of endor spectra |
topic | Physical Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8271618/ https://www.ncbi.nlm.nih.gov/pubmed/34215694 http://dx.doi.org/10.1073/pnas.2023615118 |
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