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Statistical analysis of ENDOR spectra

Electron–nuclear double resonance (ENDOR) measures the hyperfine interaction of magnetic nuclei with paramagnetic centers and is hence a powerful tool for spectroscopic investigations extending from biophysics to material science. Progress in microwave technology and the recent availability of comme...

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Autores principales: Pokern, Yvo, Eltzner, Benjamin, Huckemann, Stephan F., Beeken, Clemens, Stubbe, JoAnne, Tkach, Igor, Bennati, Marina, Hiller, Markus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8271618/
https://www.ncbi.nlm.nih.gov/pubmed/34215694
http://dx.doi.org/10.1073/pnas.2023615118
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author Pokern, Yvo
Eltzner, Benjamin
Huckemann, Stephan F.
Beeken, Clemens
Stubbe, JoAnne
Tkach, Igor
Bennati, Marina
Hiller, Markus
author_facet Pokern, Yvo
Eltzner, Benjamin
Huckemann, Stephan F.
Beeken, Clemens
Stubbe, JoAnne
Tkach, Igor
Bennati, Marina
Hiller, Markus
author_sort Pokern, Yvo
collection PubMed
description Electron–nuclear double resonance (ENDOR) measures the hyperfine interaction of magnetic nuclei with paramagnetic centers and is hence a powerful tool for spectroscopic investigations extending from biophysics to material science. Progress in microwave technology and the recent availability of commercial electron paramagnetic resonance (EPR) spectrometers up to an electron Larmor frequency of 263 GHz now open the opportunity for a more quantitative spectral analysis. Using representative spectra of a prototype amino acid radical in a biologically relevant enzyme, the [Formula: see text] in Escherichia coli ribonucleotide reductase, we developed a statistical model for ENDOR data and conducted statistical inference on the spectra including uncertainty estimation and hypothesis testing. Our approach in conjunction with (1)H/(2)H isotopic labeling of [Formula: see text] in the protein unambiguously established new unexpected spectral contributions. Density functional theory (DFT) calculations and ENDOR spectral simulations indicated that these features result from the beta-methylene hyperfine coupling and are caused by a distribution of molecular conformations, likely important for the biological function of this essential radical. The results demonstrate that model-based statistical analysis in combination with state-of-the-art spectroscopy accesses information hitherto beyond standard approaches.
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spelling pubmed-82716182021-07-16 Statistical analysis of ENDOR spectra Pokern, Yvo Eltzner, Benjamin Huckemann, Stephan F. Beeken, Clemens Stubbe, JoAnne Tkach, Igor Bennati, Marina Hiller, Markus Proc Natl Acad Sci U S A Physical Sciences Electron–nuclear double resonance (ENDOR) measures the hyperfine interaction of magnetic nuclei with paramagnetic centers and is hence a powerful tool for spectroscopic investigations extending from biophysics to material science. Progress in microwave technology and the recent availability of commercial electron paramagnetic resonance (EPR) spectrometers up to an electron Larmor frequency of 263 GHz now open the opportunity for a more quantitative spectral analysis. Using representative spectra of a prototype amino acid radical in a biologically relevant enzyme, the [Formula: see text] in Escherichia coli ribonucleotide reductase, we developed a statistical model for ENDOR data and conducted statistical inference on the spectra including uncertainty estimation and hypothesis testing. Our approach in conjunction with (1)H/(2)H isotopic labeling of [Formula: see text] in the protein unambiguously established new unexpected spectral contributions. Density functional theory (DFT) calculations and ENDOR spectral simulations indicated that these features result from the beta-methylene hyperfine coupling and are caused by a distribution of molecular conformations, likely important for the biological function of this essential radical. The results demonstrate that model-based statistical analysis in combination with state-of-the-art spectroscopy accesses information hitherto beyond standard approaches. National Academy of Sciences 2021-07-06 2021-07-02 /pmc/articles/PMC8271618/ /pubmed/34215694 http://dx.doi.org/10.1073/pnas.2023615118 Text en Copyright © 2021 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Physical Sciences
Pokern, Yvo
Eltzner, Benjamin
Huckemann, Stephan F.
Beeken, Clemens
Stubbe, JoAnne
Tkach, Igor
Bennati, Marina
Hiller, Markus
Statistical analysis of ENDOR spectra
title Statistical analysis of ENDOR spectra
title_full Statistical analysis of ENDOR spectra
title_fullStr Statistical analysis of ENDOR spectra
title_full_unstemmed Statistical analysis of ENDOR spectra
title_short Statistical analysis of ENDOR spectra
title_sort statistical analysis of endor spectra
topic Physical Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8271618/
https://www.ncbi.nlm.nih.gov/pubmed/34215694
http://dx.doi.org/10.1073/pnas.2023615118
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