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Novel Feature-Extraction Methods for the Estimation of Above-Ground Biomass in Rice Crops

Traditional methods to measure spatio-temporal variations in above-ground biomass dynamics (AGBD) predominantly rely on the extraction of several vegetation-index features highly associated with AGBD variations through the phenological crop cycle. This work presents a comprehensive comparison betwee...

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Autores principales: Jimenez-Sierra, David Alejandro, Correa, Edgar Steven, Benítez-Restrepo, Hernán Darío, Calderon, Francisco Carlos, Mondragon, Ivan Fernando, Colorado, Julian D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8271736/
https://www.ncbi.nlm.nih.gov/pubmed/34202363
http://dx.doi.org/10.3390/s21134369
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author Jimenez-Sierra, David Alejandro
Correa, Edgar Steven
Benítez-Restrepo, Hernán Darío
Calderon, Francisco Carlos
Mondragon, Ivan Fernando
Colorado, Julian D.
author_facet Jimenez-Sierra, David Alejandro
Correa, Edgar Steven
Benítez-Restrepo, Hernán Darío
Calderon, Francisco Carlos
Mondragon, Ivan Fernando
Colorado, Julian D.
author_sort Jimenez-Sierra, David Alejandro
collection PubMed
description Traditional methods to measure spatio-temporal variations in above-ground biomass dynamics (AGBD) predominantly rely on the extraction of several vegetation-index features highly associated with AGBD variations through the phenological crop cycle. This work presents a comprehensive comparison between two different approaches for feature extraction for non-destructive biomass estimation using aerial multispectral imagery. The first method is called GFKuts, an approach that optimally labels the plot canopy based on a Gaussian mixture model, a Montecarlo-based K-means, and a guided image filtering for the extraction of canopy vegetation indices associated with biomass yield. The second method is based on a Graph-Based Data Fusion (GBF) approach that does not depend on calculating vegetation-index image reflectances. Both methods are experimentally tested and compared through rice growth stages: vegetative, reproductive, and ripening. Biomass estimation correlations are calculated and compared against an assembled ground-truth biomass measurements taken by destructive sampling. The proposed GBF-Sm-Bs approach outperformed competing methods by obtaining biomass estimation correlation of [Formula: see text] with [Formula: see text] and [Formula: see text] g. This result increases the precision in the biomass estimation by around [Formula: see text] compared to previous works.
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spelling pubmed-82717362021-07-11 Novel Feature-Extraction Methods for the Estimation of Above-Ground Biomass in Rice Crops Jimenez-Sierra, David Alejandro Correa, Edgar Steven Benítez-Restrepo, Hernán Darío Calderon, Francisco Carlos Mondragon, Ivan Fernando Colorado, Julian D. Sensors (Basel) Article Traditional methods to measure spatio-temporal variations in above-ground biomass dynamics (AGBD) predominantly rely on the extraction of several vegetation-index features highly associated with AGBD variations through the phenological crop cycle. This work presents a comprehensive comparison between two different approaches for feature extraction for non-destructive biomass estimation using aerial multispectral imagery. The first method is called GFKuts, an approach that optimally labels the plot canopy based on a Gaussian mixture model, a Montecarlo-based K-means, and a guided image filtering for the extraction of canopy vegetation indices associated with biomass yield. The second method is based on a Graph-Based Data Fusion (GBF) approach that does not depend on calculating vegetation-index image reflectances. Both methods are experimentally tested and compared through rice growth stages: vegetative, reproductive, and ripening. Biomass estimation correlations are calculated and compared against an assembled ground-truth biomass measurements taken by destructive sampling. The proposed GBF-Sm-Bs approach outperformed competing methods by obtaining biomass estimation correlation of [Formula: see text] with [Formula: see text] and [Formula: see text] g. This result increases the precision in the biomass estimation by around [Formula: see text] compared to previous works. MDPI 2021-06-25 /pmc/articles/PMC8271736/ /pubmed/34202363 http://dx.doi.org/10.3390/s21134369 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Jimenez-Sierra, David Alejandro
Correa, Edgar Steven
Benítez-Restrepo, Hernán Darío
Calderon, Francisco Carlos
Mondragon, Ivan Fernando
Colorado, Julian D.
Novel Feature-Extraction Methods for the Estimation of Above-Ground Biomass in Rice Crops
title Novel Feature-Extraction Methods for the Estimation of Above-Ground Biomass in Rice Crops
title_full Novel Feature-Extraction Methods for the Estimation of Above-Ground Biomass in Rice Crops
title_fullStr Novel Feature-Extraction Methods for the Estimation of Above-Ground Biomass in Rice Crops
title_full_unstemmed Novel Feature-Extraction Methods for the Estimation of Above-Ground Biomass in Rice Crops
title_short Novel Feature-Extraction Methods for the Estimation of Above-Ground Biomass in Rice Crops
title_sort novel feature-extraction methods for the estimation of above-ground biomass in rice crops
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8271736/
https://www.ncbi.nlm.nih.gov/pubmed/34202363
http://dx.doi.org/10.3390/s21134369
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