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Theoretical Prediction of Structures, Vibrational Circular Dichroism, and Infrared Spectra of Chiral Be(4)B(8) Cluster at Different Temperatures
Lowest-energy structures, the distribution of isomers, and their molecular properties depend significantly on geometry and temperature. Total energy computations using DFT methodology are typically carried out at a temperature of zero K; thereby, entropic contributions to the total energy are neglec...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8271876/ https://www.ncbi.nlm.nih.gov/pubmed/34203563 http://dx.doi.org/10.3390/molecules26133953 |
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author | Buelna-García, Carlos Emiliano Robles-Chaparro, Eduardo Parra-Arellano, Tristan Quiroz-Castillo, Jesus Manuel del-Castillo-Castro, Teresa Martínez-Guajardo, Gerardo Castillo-Quevedo, Cesar de-León-Flores, Aned Anzueto-Sánchez, Gilberto Martin-del-Campo-Solis, Martha Fabiola Mendoza-Wilson, Ana Maria Vásquez-Espinal, Alejandro Cabellos, Jose Luis |
author_facet | Buelna-García, Carlos Emiliano Robles-Chaparro, Eduardo Parra-Arellano, Tristan Quiroz-Castillo, Jesus Manuel del-Castillo-Castro, Teresa Martínez-Guajardo, Gerardo Castillo-Quevedo, Cesar de-León-Flores, Aned Anzueto-Sánchez, Gilberto Martin-del-Campo-Solis, Martha Fabiola Mendoza-Wilson, Ana Maria Vásquez-Espinal, Alejandro Cabellos, Jose Luis |
author_sort | Buelna-García, Carlos Emiliano |
collection | PubMed |
description | Lowest-energy structures, the distribution of isomers, and their molecular properties depend significantly on geometry and temperature. Total energy computations using DFT methodology are typically carried out at a temperature of zero K; thereby, entropic contributions to the total energy are neglected, even though functional materials work at finite temperatures. In the present study, the probability of the occurrence of one particular Be(4)B(8) isomer at temperature T is estimated by employing Gibbs free energy computed within the framework of quantum statistical mechanics and nanothermodynamics. To identify a list of all possible low-energy chiral and achiral structures, an exhaustive and efficient exploration of the potential/free energy surfaces is carried out using a multi-level multistep global genetic algorithm search coupled with DFT. In addition, we discuss the energetic ordering of structures computed at the DFT level against single-point energy calculations at the CCSD(T) level of theory. The total VCD/IR spectra as a function of temperature are computed using each isomer’s probability of occurrence in a Boltzmann-weighted superposition of each isomer’s spectrum. Additionally, we present chemical bonding analysis using the adaptive natural density partitioning method in the chiral putative global minimum. The transition state structures and the enantiomer–enantiomer and enantiomer–achiral activation energies as a function of temperature evidence that a change from an endergonic to an exergonic type of reaction occurs at a temperature of 739 K. |
format | Online Article Text |
id | pubmed-8271876 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-82718762021-07-11 Theoretical Prediction of Structures, Vibrational Circular Dichroism, and Infrared Spectra of Chiral Be(4)B(8) Cluster at Different Temperatures Buelna-García, Carlos Emiliano Robles-Chaparro, Eduardo Parra-Arellano, Tristan Quiroz-Castillo, Jesus Manuel del-Castillo-Castro, Teresa Martínez-Guajardo, Gerardo Castillo-Quevedo, Cesar de-León-Flores, Aned Anzueto-Sánchez, Gilberto Martin-del-Campo-Solis, Martha Fabiola Mendoza-Wilson, Ana Maria Vásquez-Espinal, Alejandro Cabellos, Jose Luis Molecules Article Lowest-energy structures, the distribution of isomers, and their molecular properties depend significantly on geometry and temperature. Total energy computations using DFT methodology are typically carried out at a temperature of zero K; thereby, entropic contributions to the total energy are neglected, even though functional materials work at finite temperatures. In the present study, the probability of the occurrence of one particular Be(4)B(8) isomer at temperature T is estimated by employing Gibbs free energy computed within the framework of quantum statistical mechanics and nanothermodynamics. To identify a list of all possible low-energy chiral and achiral structures, an exhaustive and efficient exploration of the potential/free energy surfaces is carried out using a multi-level multistep global genetic algorithm search coupled with DFT. In addition, we discuss the energetic ordering of structures computed at the DFT level against single-point energy calculations at the CCSD(T) level of theory. The total VCD/IR spectra as a function of temperature are computed using each isomer’s probability of occurrence in a Boltzmann-weighted superposition of each isomer’s spectrum. Additionally, we present chemical bonding analysis using the adaptive natural density partitioning method in the chiral putative global minimum. The transition state structures and the enantiomer–enantiomer and enantiomer–achiral activation energies as a function of temperature evidence that a change from an endergonic to an exergonic type of reaction occurs at a temperature of 739 K. MDPI 2021-06-28 /pmc/articles/PMC8271876/ /pubmed/34203563 http://dx.doi.org/10.3390/molecules26133953 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Buelna-García, Carlos Emiliano Robles-Chaparro, Eduardo Parra-Arellano, Tristan Quiroz-Castillo, Jesus Manuel del-Castillo-Castro, Teresa Martínez-Guajardo, Gerardo Castillo-Quevedo, Cesar de-León-Flores, Aned Anzueto-Sánchez, Gilberto Martin-del-Campo-Solis, Martha Fabiola Mendoza-Wilson, Ana Maria Vásquez-Espinal, Alejandro Cabellos, Jose Luis Theoretical Prediction of Structures, Vibrational Circular Dichroism, and Infrared Spectra of Chiral Be(4)B(8) Cluster at Different Temperatures |
title | Theoretical Prediction of Structures, Vibrational Circular Dichroism, and Infrared Spectra of Chiral Be(4)B(8) Cluster at Different Temperatures |
title_full | Theoretical Prediction of Structures, Vibrational Circular Dichroism, and Infrared Spectra of Chiral Be(4)B(8) Cluster at Different Temperatures |
title_fullStr | Theoretical Prediction of Structures, Vibrational Circular Dichroism, and Infrared Spectra of Chiral Be(4)B(8) Cluster at Different Temperatures |
title_full_unstemmed | Theoretical Prediction of Structures, Vibrational Circular Dichroism, and Infrared Spectra of Chiral Be(4)B(8) Cluster at Different Temperatures |
title_short | Theoretical Prediction of Structures, Vibrational Circular Dichroism, and Infrared Spectra of Chiral Be(4)B(8) Cluster at Different Temperatures |
title_sort | theoretical prediction of structures, vibrational circular dichroism, and infrared spectra of chiral be(4)b(8) cluster at different temperatures |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8271876/ https://www.ncbi.nlm.nih.gov/pubmed/34203563 http://dx.doi.org/10.3390/molecules26133953 |
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