Cargando…

Theoretical Prediction of Structures, Vibrational Circular Dichroism, and Infrared Spectra of Chiral Be(4)B(8) Cluster at Different Temperatures

Lowest-energy structures, the distribution of isomers, and their molecular properties depend significantly on geometry and temperature. Total energy computations using DFT methodology are typically carried out at a temperature of zero K; thereby, entropic contributions to the total energy are neglec...

Descripción completa

Detalles Bibliográficos
Autores principales: Buelna-García, Carlos Emiliano, Robles-Chaparro, Eduardo, Parra-Arellano, Tristan, Quiroz-Castillo, Jesus Manuel, del-Castillo-Castro, Teresa, Martínez-Guajardo, Gerardo, Castillo-Quevedo, Cesar, de-León-Flores, Aned, Anzueto-Sánchez, Gilberto, Martin-del-Campo-Solis, Martha Fabiola, Mendoza-Wilson, Ana Maria, Vásquez-Espinal, Alejandro, Cabellos, Jose Luis
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8271876/
https://www.ncbi.nlm.nih.gov/pubmed/34203563
http://dx.doi.org/10.3390/molecules26133953
_version_ 1783721093707595776
author Buelna-García, Carlos Emiliano
Robles-Chaparro, Eduardo
Parra-Arellano, Tristan
Quiroz-Castillo, Jesus Manuel
del-Castillo-Castro, Teresa
Martínez-Guajardo, Gerardo
Castillo-Quevedo, Cesar
de-León-Flores, Aned
Anzueto-Sánchez, Gilberto
Martin-del-Campo-Solis, Martha Fabiola
Mendoza-Wilson, Ana Maria
Vásquez-Espinal, Alejandro
Cabellos, Jose Luis
author_facet Buelna-García, Carlos Emiliano
Robles-Chaparro, Eduardo
Parra-Arellano, Tristan
Quiroz-Castillo, Jesus Manuel
del-Castillo-Castro, Teresa
Martínez-Guajardo, Gerardo
Castillo-Quevedo, Cesar
de-León-Flores, Aned
Anzueto-Sánchez, Gilberto
Martin-del-Campo-Solis, Martha Fabiola
Mendoza-Wilson, Ana Maria
Vásquez-Espinal, Alejandro
Cabellos, Jose Luis
author_sort Buelna-García, Carlos Emiliano
collection PubMed
description Lowest-energy structures, the distribution of isomers, and their molecular properties depend significantly on geometry and temperature. Total energy computations using DFT methodology are typically carried out at a temperature of zero K; thereby, entropic contributions to the total energy are neglected, even though functional materials work at finite temperatures. In the present study, the probability of the occurrence of one particular Be(4)B(8) isomer at temperature T is estimated by employing Gibbs free energy computed within the framework of quantum statistical mechanics and nanothermodynamics. To identify a list of all possible low-energy chiral and achiral structures, an exhaustive and efficient exploration of the potential/free energy surfaces is carried out using a multi-level multistep global genetic algorithm search coupled with DFT. In addition, we discuss the energetic ordering of structures computed at the DFT level against single-point energy calculations at the CCSD(T) level of theory. The total VCD/IR spectra as a function of temperature are computed using each isomer’s probability of occurrence in a Boltzmann-weighted superposition of each isomer’s spectrum. Additionally, we present chemical bonding analysis using the adaptive natural density partitioning method in the chiral putative global minimum. The transition state structures and the enantiomer–enantiomer and enantiomer–achiral activation energies as a function of temperature evidence that a change from an endergonic to an exergonic type of reaction occurs at a temperature of 739 K.
format Online
Article
Text
id pubmed-8271876
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-82718762021-07-11 Theoretical Prediction of Structures, Vibrational Circular Dichroism, and Infrared Spectra of Chiral Be(4)B(8) Cluster at Different Temperatures Buelna-García, Carlos Emiliano Robles-Chaparro, Eduardo Parra-Arellano, Tristan Quiroz-Castillo, Jesus Manuel del-Castillo-Castro, Teresa Martínez-Guajardo, Gerardo Castillo-Quevedo, Cesar de-León-Flores, Aned Anzueto-Sánchez, Gilberto Martin-del-Campo-Solis, Martha Fabiola Mendoza-Wilson, Ana Maria Vásquez-Espinal, Alejandro Cabellos, Jose Luis Molecules Article Lowest-energy structures, the distribution of isomers, and their molecular properties depend significantly on geometry and temperature. Total energy computations using DFT methodology are typically carried out at a temperature of zero K; thereby, entropic contributions to the total energy are neglected, even though functional materials work at finite temperatures. In the present study, the probability of the occurrence of one particular Be(4)B(8) isomer at temperature T is estimated by employing Gibbs free energy computed within the framework of quantum statistical mechanics and nanothermodynamics. To identify a list of all possible low-energy chiral and achiral structures, an exhaustive and efficient exploration of the potential/free energy surfaces is carried out using a multi-level multistep global genetic algorithm search coupled with DFT. In addition, we discuss the energetic ordering of structures computed at the DFT level against single-point energy calculations at the CCSD(T) level of theory. The total VCD/IR spectra as a function of temperature are computed using each isomer’s probability of occurrence in a Boltzmann-weighted superposition of each isomer’s spectrum. Additionally, we present chemical bonding analysis using the adaptive natural density partitioning method in the chiral putative global minimum. The transition state structures and the enantiomer–enantiomer and enantiomer–achiral activation energies as a function of temperature evidence that a change from an endergonic to an exergonic type of reaction occurs at a temperature of 739 K. MDPI 2021-06-28 /pmc/articles/PMC8271876/ /pubmed/34203563 http://dx.doi.org/10.3390/molecules26133953 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Buelna-García, Carlos Emiliano
Robles-Chaparro, Eduardo
Parra-Arellano, Tristan
Quiroz-Castillo, Jesus Manuel
del-Castillo-Castro, Teresa
Martínez-Guajardo, Gerardo
Castillo-Quevedo, Cesar
de-León-Flores, Aned
Anzueto-Sánchez, Gilberto
Martin-del-Campo-Solis, Martha Fabiola
Mendoza-Wilson, Ana Maria
Vásquez-Espinal, Alejandro
Cabellos, Jose Luis
Theoretical Prediction of Structures, Vibrational Circular Dichroism, and Infrared Spectra of Chiral Be(4)B(8) Cluster at Different Temperatures
title Theoretical Prediction of Structures, Vibrational Circular Dichroism, and Infrared Spectra of Chiral Be(4)B(8) Cluster at Different Temperatures
title_full Theoretical Prediction of Structures, Vibrational Circular Dichroism, and Infrared Spectra of Chiral Be(4)B(8) Cluster at Different Temperatures
title_fullStr Theoretical Prediction of Structures, Vibrational Circular Dichroism, and Infrared Spectra of Chiral Be(4)B(8) Cluster at Different Temperatures
title_full_unstemmed Theoretical Prediction of Structures, Vibrational Circular Dichroism, and Infrared Spectra of Chiral Be(4)B(8) Cluster at Different Temperatures
title_short Theoretical Prediction of Structures, Vibrational Circular Dichroism, and Infrared Spectra of Chiral Be(4)B(8) Cluster at Different Temperatures
title_sort theoretical prediction of structures, vibrational circular dichroism, and infrared spectra of chiral be(4)b(8) cluster at different temperatures
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8271876/
https://www.ncbi.nlm.nih.gov/pubmed/34203563
http://dx.doi.org/10.3390/molecules26133953
work_keys_str_mv AT buelnagarciacarlosemiliano theoreticalpredictionofstructuresvibrationalcirculardichroismandinfraredspectraofchiralbe4b8clusteratdifferenttemperatures
AT robleschaparroeduardo theoreticalpredictionofstructuresvibrationalcirculardichroismandinfraredspectraofchiralbe4b8clusteratdifferenttemperatures
AT parraarellanotristan theoreticalpredictionofstructuresvibrationalcirculardichroismandinfraredspectraofchiralbe4b8clusteratdifferenttemperatures
AT quirozcastillojesusmanuel theoreticalpredictionofstructuresvibrationalcirculardichroismandinfraredspectraofchiralbe4b8clusteratdifferenttemperatures
AT delcastillocastroteresa theoreticalpredictionofstructuresvibrationalcirculardichroismandinfraredspectraofchiralbe4b8clusteratdifferenttemperatures
AT martinezguajardogerardo theoreticalpredictionofstructuresvibrationalcirculardichroismandinfraredspectraofchiralbe4b8clusteratdifferenttemperatures
AT castilloquevedocesar theoreticalpredictionofstructuresvibrationalcirculardichroismandinfraredspectraofchiralbe4b8clusteratdifferenttemperatures
AT deleonfloresaned theoreticalpredictionofstructuresvibrationalcirculardichroismandinfraredspectraofchiralbe4b8clusteratdifferenttemperatures
AT anzuetosanchezgilberto theoreticalpredictionofstructuresvibrationalcirculardichroismandinfraredspectraofchiralbe4b8clusteratdifferenttemperatures
AT martindelcamposolismarthafabiola theoreticalpredictionofstructuresvibrationalcirculardichroismandinfraredspectraofchiralbe4b8clusteratdifferenttemperatures
AT mendozawilsonanamaria theoreticalpredictionofstructuresvibrationalcirculardichroismandinfraredspectraofchiralbe4b8clusteratdifferenttemperatures
AT vasquezespinalalejandro theoreticalpredictionofstructuresvibrationalcirculardichroismandinfraredspectraofchiralbe4b8clusteratdifferenttemperatures
AT cabellosjoseluis theoreticalpredictionofstructuresvibrationalcirculardichroismandinfraredspectraofchiralbe4b8clusteratdifferenttemperatures