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Asbestos Detection with Fluorescence Microscopy Images and Deep Learning
Fluorescent probes can be used to detect various types of asbestos (serpentine and amphibole groups); however, the fiber counting using our previously developed software was not accurate for samples with low fiber concentration. Machine learning-based techniques (e.g., deep learning) for image analy...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8272007/ https://www.ncbi.nlm.nih.gov/pubmed/34283157 http://dx.doi.org/10.3390/s21134582 |
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author | Cai, Changjie Nishimura, Tomoki Hwang, Jooyeon Hu, Xiao-Ming Kuroda, Akio |
author_facet | Cai, Changjie Nishimura, Tomoki Hwang, Jooyeon Hu, Xiao-Ming Kuroda, Akio |
author_sort | Cai, Changjie |
collection | PubMed |
description | Fluorescent probes can be used to detect various types of asbestos (serpentine and amphibole groups); however, the fiber counting using our previously developed software was not accurate for samples with low fiber concentration. Machine learning-based techniques (e.g., deep learning) for image analysis, particularly Convolutional Neural Networks (CNN), have been widely applied to many areas. The objectives of this study were to (1) create a database of a wide-range asbestos concentration (0–50 fibers/liter) fluorescence microscopy (FM) images in the laboratory; and (2) determine the applicability of the state-of-the-art object detection CNN model, YOLOv4, to accurately detect asbestos. We captured the fluorescence microscopy images containing asbestos and labeled the individual asbestos in the images. We trained the YOLOv4 model with the labeled images using one GTX 1660 Ti Graphics Processing Unit (GPU). Our results demonstrated the exceptional capacity of the YOLOv4 model to learn the fluorescent asbestos morphologies. The mean average precision at a threshold of 0.5 (mAP@0.5) was 96.1% ± 0.4%, using the National Institute for Occupational Safety and Health (NIOSH) fiber counting Method 7400 as a reference method. Compared to our previous counting software (Intec/HU), the YOLOv4 achieved higher accuracy (0.997 vs. 0.979), particularly much higher precision (0.898 vs. 0.418), recall (0.898 vs. 0.780) and F-1 score (0.898 vs. 0.544). In addition, the YOLOv4 performed much better for low fiber concentration samples (<15 fibers/liter) compared to Intec/HU. Therefore, the FM method coupled with YOLOv4 is remarkable in detecting asbestos fibers and differentiating them from other non-asbestos particles. |
format | Online Article Text |
id | pubmed-8272007 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-82720072021-07-11 Asbestos Detection with Fluorescence Microscopy Images and Deep Learning Cai, Changjie Nishimura, Tomoki Hwang, Jooyeon Hu, Xiao-Ming Kuroda, Akio Sensors (Basel) Communication Fluorescent probes can be used to detect various types of asbestos (serpentine and amphibole groups); however, the fiber counting using our previously developed software was not accurate for samples with low fiber concentration. Machine learning-based techniques (e.g., deep learning) for image analysis, particularly Convolutional Neural Networks (CNN), have been widely applied to many areas. The objectives of this study were to (1) create a database of a wide-range asbestos concentration (0–50 fibers/liter) fluorescence microscopy (FM) images in the laboratory; and (2) determine the applicability of the state-of-the-art object detection CNN model, YOLOv4, to accurately detect asbestos. We captured the fluorescence microscopy images containing asbestos and labeled the individual asbestos in the images. We trained the YOLOv4 model with the labeled images using one GTX 1660 Ti Graphics Processing Unit (GPU). Our results demonstrated the exceptional capacity of the YOLOv4 model to learn the fluorescent asbestos morphologies. The mean average precision at a threshold of 0.5 (mAP@0.5) was 96.1% ± 0.4%, using the National Institute for Occupational Safety and Health (NIOSH) fiber counting Method 7400 as a reference method. Compared to our previous counting software (Intec/HU), the YOLOv4 achieved higher accuracy (0.997 vs. 0.979), particularly much higher precision (0.898 vs. 0.418), recall (0.898 vs. 0.780) and F-1 score (0.898 vs. 0.544). In addition, the YOLOv4 performed much better for low fiber concentration samples (<15 fibers/liter) compared to Intec/HU. Therefore, the FM method coupled with YOLOv4 is remarkable in detecting asbestos fibers and differentiating them from other non-asbestos particles. MDPI 2021-07-04 /pmc/articles/PMC8272007/ /pubmed/34283157 http://dx.doi.org/10.3390/s21134582 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Communication Cai, Changjie Nishimura, Tomoki Hwang, Jooyeon Hu, Xiao-Ming Kuroda, Akio Asbestos Detection with Fluorescence Microscopy Images and Deep Learning |
title | Asbestos Detection with Fluorescence Microscopy Images and Deep Learning |
title_full | Asbestos Detection with Fluorescence Microscopy Images and Deep Learning |
title_fullStr | Asbestos Detection with Fluorescence Microscopy Images and Deep Learning |
title_full_unstemmed | Asbestos Detection with Fluorescence Microscopy Images and Deep Learning |
title_short | Asbestos Detection with Fluorescence Microscopy Images and Deep Learning |
title_sort | asbestos detection with fluorescence microscopy images and deep learning |
topic | Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8272007/ https://www.ncbi.nlm.nih.gov/pubmed/34283157 http://dx.doi.org/10.3390/s21134582 |
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