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Construction and validation of a 15-gene ferroptosis signature in lung adenocarcinoma
BACKGROUND: Ferroptosis is a novel form of programmed cell death characterized by the excessive accumulation of intracellular iron and an increase in reactive oxygen species. Emerging studies have shown that ferroptosis plays a vital role in the progression of lung adenocarcinoma, but the effect of...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8272465/ https://www.ncbi.nlm.nih.gov/pubmed/34277151 http://dx.doi.org/10.7717/peerj.11687 |
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author | Tu, Guangxu Peng, Weilin Cai, Qidong Zhao, Zhenyu Peng, Xiong He, Boxue Zhang, Pengfei Shi, Shuai Tao, Yongguang Wang, Xiang |
author_facet | Tu, Guangxu Peng, Weilin Cai, Qidong Zhao, Zhenyu Peng, Xiong He, Boxue Zhang, Pengfei Shi, Shuai Tao, Yongguang Wang, Xiang |
author_sort | Tu, Guangxu |
collection | PubMed |
description | BACKGROUND: Ferroptosis is a novel form of programmed cell death characterized by the excessive accumulation of intracellular iron and an increase in reactive oxygen species. Emerging studies have shown that ferroptosis plays a vital role in the progression of lung adenocarcinoma, but the effect of ferroptosis-related genes on prognosis has been poorly studied. The purpose of this study was to explore the prognostic value of ferroptosis-related genes. METHODS: Lung adenocarcinoma samples were downloaded from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. The least absolute shrinkage and selection operator (LASSO) Cox regression algorithm was used to establish a predictive signature for risk stratification. Kaplan–Meier (K–M) survival analysis and receiver operating characteristic (ROC) curve analysis were conducted to evaluate the signature. We further explored the potential correlation between the risk score model and tumor immune status. RESULTS: A 15-gene ferroptosis signature was constructed to classify patients into different risk groups. The overall survival (OS) of patients in the high-risk group was significantly shorter than that of patients in the low-risk group. The signature could predict OS independent of other risk factors. Single-sample gene set enrichment analysis (ssGSEA) identified the difference in immune status between the two groups. Patients in the high-risk group had stronger immune suppression, especially in the antigen presentation process. CONCLUSIONS: The 15-gene ferroptosis signature identified in this study could be a potential biomarker for prognosis prediction in lung adenocarcinoma. Targeting ferroptosis might be a promising therapeutic alternative for lung adenocarcinoma. |
format | Online Article Text |
id | pubmed-8272465 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-82724652021-07-16 Construction and validation of a 15-gene ferroptosis signature in lung adenocarcinoma Tu, Guangxu Peng, Weilin Cai, Qidong Zhao, Zhenyu Peng, Xiong He, Boxue Zhang, Pengfei Shi, Shuai Tao, Yongguang Wang, Xiang PeerJ Bioinformatics BACKGROUND: Ferroptosis is a novel form of programmed cell death characterized by the excessive accumulation of intracellular iron and an increase in reactive oxygen species. Emerging studies have shown that ferroptosis plays a vital role in the progression of lung adenocarcinoma, but the effect of ferroptosis-related genes on prognosis has been poorly studied. The purpose of this study was to explore the prognostic value of ferroptosis-related genes. METHODS: Lung adenocarcinoma samples were downloaded from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. The least absolute shrinkage and selection operator (LASSO) Cox regression algorithm was used to establish a predictive signature for risk stratification. Kaplan–Meier (K–M) survival analysis and receiver operating characteristic (ROC) curve analysis were conducted to evaluate the signature. We further explored the potential correlation between the risk score model and tumor immune status. RESULTS: A 15-gene ferroptosis signature was constructed to classify patients into different risk groups. The overall survival (OS) of patients in the high-risk group was significantly shorter than that of patients in the low-risk group. The signature could predict OS independent of other risk factors. Single-sample gene set enrichment analysis (ssGSEA) identified the difference in immune status between the two groups. Patients in the high-risk group had stronger immune suppression, especially in the antigen presentation process. CONCLUSIONS: The 15-gene ferroptosis signature identified in this study could be a potential biomarker for prognosis prediction in lung adenocarcinoma. Targeting ferroptosis might be a promising therapeutic alternative for lung adenocarcinoma. PeerJ Inc. 2021-07-07 /pmc/articles/PMC8272465/ /pubmed/34277151 http://dx.doi.org/10.7717/peerj.11687 Text en © 2021 Tu et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Bioinformatics Tu, Guangxu Peng, Weilin Cai, Qidong Zhao, Zhenyu Peng, Xiong He, Boxue Zhang, Pengfei Shi, Shuai Tao, Yongguang Wang, Xiang Construction and validation of a 15-gene ferroptosis signature in lung adenocarcinoma |
title | Construction and validation of a 15-gene ferroptosis signature in lung adenocarcinoma |
title_full | Construction and validation of a 15-gene ferroptosis signature in lung adenocarcinoma |
title_fullStr | Construction and validation of a 15-gene ferroptosis signature in lung adenocarcinoma |
title_full_unstemmed | Construction and validation of a 15-gene ferroptosis signature in lung adenocarcinoma |
title_short | Construction and validation of a 15-gene ferroptosis signature in lung adenocarcinoma |
title_sort | construction and validation of a 15-gene ferroptosis signature in lung adenocarcinoma |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8272465/ https://www.ncbi.nlm.nih.gov/pubmed/34277151 http://dx.doi.org/10.7717/peerj.11687 |
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