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Construction and validation of a 15-gene ferroptosis signature in lung adenocarcinoma

BACKGROUND: Ferroptosis is a novel form of programmed cell death characterized by the excessive accumulation of intracellular iron and an increase in reactive oxygen species. Emerging studies have shown that ferroptosis plays a vital role in the progression of lung adenocarcinoma, but the effect of...

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Autores principales: Tu, Guangxu, Peng, Weilin, Cai, Qidong, Zhao, Zhenyu, Peng, Xiong, He, Boxue, Zhang, Pengfei, Shi, Shuai, Tao, Yongguang, Wang, Xiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8272465/
https://www.ncbi.nlm.nih.gov/pubmed/34277151
http://dx.doi.org/10.7717/peerj.11687
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author Tu, Guangxu
Peng, Weilin
Cai, Qidong
Zhao, Zhenyu
Peng, Xiong
He, Boxue
Zhang, Pengfei
Shi, Shuai
Tao, Yongguang
Wang, Xiang
author_facet Tu, Guangxu
Peng, Weilin
Cai, Qidong
Zhao, Zhenyu
Peng, Xiong
He, Boxue
Zhang, Pengfei
Shi, Shuai
Tao, Yongguang
Wang, Xiang
author_sort Tu, Guangxu
collection PubMed
description BACKGROUND: Ferroptosis is a novel form of programmed cell death characterized by the excessive accumulation of intracellular iron and an increase in reactive oxygen species. Emerging studies have shown that ferroptosis plays a vital role in the progression of lung adenocarcinoma, but the effect of ferroptosis-related genes on prognosis has been poorly studied. The purpose of this study was to explore the prognostic value of ferroptosis-related genes. METHODS: Lung adenocarcinoma samples were downloaded from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. The least absolute shrinkage and selection operator (LASSO) Cox regression algorithm was used to establish a predictive signature for risk stratification. Kaplan–Meier (K–M) survival analysis and receiver operating characteristic (ROC) curve analysis were conducted to evaluate the signature. We further explored the potential correlation between the risk score model and tumor immune status. RESULTS: A 15-gene ferroptosis signature was constructed to classify patients into different risk groups. The overall survival (OS) of patients in the high-risk group was significantly shorter than that of patients in the low-risk group. The signature could predict OS independent of other risk factors. Single-sample gene set enrichment analysis (ssGSEA) identified the difference in immune status between the two groups. Patients in the high-risk group had stronger immune suppression, especially in the antigen presentation process. CONCLUSIONS: The 15-gene ferroptosis signature identified in this study could be a potential biomarker for prognosis prediction in lung adenocarcinoma. Targeting ferroptosis might be a promising therapeutic alternative for lung adenocarcinoma.
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spelling pubmed-82724652021-07-16 Construction and validation of a 15-gene ferroptosis signature in lung adenocarcinoma Tu, Guangxu Peng, Weilin Cai, Qidong Zhao, Zhenyu Peng, Xiong He, Boxue Zhang, Pengfei Shi, Shuai Tao, Yongguang Wang, Xiang PeerJ Bioinformatics BACKGROUND: Ferroptosis is a novel form of programmed cell death characterized by the excessive accumulation of intracellular iron and an increase in reactive oxygen species. Emerging studies have shown that ferroptosis plays a vital role in the progression of lung adenocarcinoma, but the effect of ferroptosis-related genes on prognosis has been poorly studied. The purpose of this study was to explore the prognostic value of ferroptosis-related genes. METHODS: Lung adenocarcinoma samples were downloaded from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. The least absolute shrinkage and selection operator (LASSO) Cox regression algorithm was used to establish a predictive signature for risk stratification. Kaplan–Meier (K–M) survival analysis and receiver operating characteristic (ROC) curve analysis were conducted to evaluate the signature. We further explored the potential correlation between the risk score model and tumor immune status. RESULTS: A 15-gene ferroptosis signature was constructed to classify patients into different risk groups. The overall survival (OS) of patients in the high-risk group was significantly shorter than that of patients in the low-risk group. The signature could predict OS independent of other risk factors. Single-sample gene set enrichment analysis (ssGSEA) identified the difference in immune status between the two groups. Patients in the high-risk group had stronger immune suppression, especially in the antigen presentation process. CONCLUSIONS: The 15-gene ferroptosis signature identified in this study could be a potential biomarker for prognosis prediction in lung adenocarcinoma. Targeting ferroptosis might be a promising therapeutic alternative for lung adenocarcinoma. PeerJ Inc. 2021-07-07 /pmc/articles/PMC8272465/ /pubmed/34277151 http://dx.doi.org/10.7717/peerj.11687 Text en © 2021 Tu et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Tu, Guangxu
Peng, Weilin
Cai, Qidong
Zhao, Zhenyu
Peng, Xiong
He, Boxue
Zhang, Pengfei
Shi, Shuai
Tao, Yongguang
Wang, Xiang
Construction and validation of a 15-gene ferroptosis signature in lung adenocarcinoma
title Construction and validation of a 15-gene ferroptosis signature in lung adenocarcinoma
title_full Construction and validation of a 15-gene ferroptosis signature in lung adenocarcinoma
title_fullStr Construction and validation of a 15-gene ferroptosis signature in lung adenocarcinoma
title_full_unstemmed Construction and validation of a 15-gene ferroptosis signature in lung adenocarcinoma
title_short Construction and validation of a 15-gene ferroptosis signature in lung adenocarcinoma
title_sort construction and validation of a 15-gene ferroptosis signature in lung adenocarcinoma
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8272465/
https://www.ncbi.nlm.nih.gov/pubmed/34277151
http://dx.doi.org/10.7717/peerj.11687
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