Cargando…

Toward genomic selection in Pinus taeda: Integrating resources to support array design in a complex conifer genome

PREMISE: An informatics approach was used for the construction of an Axiom genotyping array from heterogeneous, high‐throughput sequence data to assess the complex genome of loblolly pine (Pinus taeda). METHODS: High‐throughput sequence data, sourced from exome capture and whole genome reduced‐repre...

Descripción completa

Detalles Bibliográficos
Autores principales:	Caballero, Madison, Lauer, Edwin, Bennett, Jeremy, Zaman, Sumaira, McEvoy, Susan, Acosta, Juan, Jackson, Colin, Townsend, Laura, Eckert, Andrew, Whetten, Ross W., Loopstra, Carol, Holliday, Jason, Mandal, Mihir, Wegrzyn, Jill L., Isik, Fikret
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	John Wiley and Sons Inc. 2021
Materias:	Genomic Resources Articles
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8272584/ https://www.ncbi.nlm.nih.gov/pubmed/34268018 http://dx.doi.org/10.1002/aps3.11439

Ejemplares similares

Exome Resequencing Reveals Evolutionary History, Genomic Diversity, and Targets of Selection in the Conifers Pinus taeda and Pinus elliottii
por: Acosta, Juan J, et al.
Publicado: (2019)

Genomic selection using a realized genomic relationship matrix in a Pinus taeda L. cloned population
por: Zapata-Valenzuela, Jaime, et al.
Publicado: (2011)

The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences
por: Kovach, Allen, et al.
Publicado: (2010)

Prediction ability of genome-wide markers in Pinus taeda L. within and between population is affected by relatedness to the training population and trait genetic architecture
por: Lauer, Edwin, et al.
Publicado: (2021)

Genomic prediction for fusiform rust disease incidence in a large cloned population of Pinus taeda
por: Shalizi, Mohammad Nasir, et al.
Publicado: (2021)

Development of DNA methylation‐based epigenetic age predictors in loblolly pine (Pinus taeda)
por: Gardner, Steven T., et al.
Publicado: (2022)

Exome genotyping, linkage disequilibrium and population structure in loblolly pine (Pinus taeda L.)
por: Lu, Mengmeng, et al.
Publicado: (2016)

Detecting the genetic basis of local adaptation in loblolly pine (Pinus taeda L.) using whole exome‐wide genotyping and an integrative landscape genomics analysis approach
por: Lu, Mengmeng, et al.
Publicado: (2019)

Erratum to: Exome genotyping, linkage disequilibrium and population structure in loblolly pine (Pinus taeda L.)
por: Lu, Mengmeng, et al.
Publicado: (2016)

A Consensus Genetic Map for Pinus taeda and Pinus elliottii and Extent of Linkage Disequilibrium in Two Genotype-Phenotype Discovery Populations of Pinus taeda
por: Westbrook, Jared W., et al.
Publicado: (2015)

Unique Features of the Loblolly Pine (Pinus taeda L.) Megagenome Revealed Through Sequence Annotation
por: Wegrzyn, Jill L., et al.
Publicado: (2014)

Breeding for Climate Change Resilience: A Case Study of Loblolly Pine (Pinus taeda L.) in North America
por: Matallana-Ramirez, Lilian P., et al.
Publicado: (2021)

The western redcedar genome reveals low genetic diversity in a self-compatible conifer
por: Shalev, Tal J., et al.
Publicado: (2022)

Micropropagation of Pinus taeda L. via axillary buds
por: Francisdo de Oliveira, Leandro, et al.
Publicado: (2011)

Exploring the genetic basis of gene transcript abundance and metabolite levels in loblolly pine (Pinus taeda L.) using association mapping and network construction
por: Lu, Mengmeng, et al.
Publicado: (2018)

Accuracy of Genomic Selection Methods in a Standard Data Set of Loblolly Pine (Pinus taeda L.)
por: Resende, M. F. R., et al.
Publicado: (2012)

Complete chloroplast genome sequence and comparative analysis of loblolly pine (Pinus taeda L.) with related species
por: Asaf, Sajjad, et al.
Publicado: (2018)

Taming the massive genome of Scots pine with PiSy50k, a new genotyping array for conifer research
por: Kastally, Chedly, et al.
Publicado: (2022)

Targeted sequencing in the loblolly pine (Pinus taeda) megagenome by exome capture
por: Neves, Leandro, et al.
Publicado: (2011)

An Improved Method of RNA Isolation from Loblolly Pine (P. taeda L.) and Other Conifer Species
por: Lorenz, W. Walter, et al.
Publicado: (2010)

Welcome to the big leaves: Best practices for improving genome annotation in non‐model plant genomes
por: Vuruputoor, Vidya S., et al.
Publicado: (2023)

Heterologous Array Analysis in Pinaceae: Hybridization of Pinus Taeda cDNA Arrays With cDNA From Needles and Embryogenic Cultures of P. Taeda, P. Sylvestris or Picea Abies
por: van Zyl, Leonel, et al.
Publicado: (2002)

Development of DArT (Diversity Arrays Technology) for high-throughput genotyping of Pinus taeda and closely related species
por: Alves-Freitas, Dione MT, et al.
Publicado: (2011)

Effect of Pinus taeda Hydrolyzed Lignin on Biochemical Profile, Oxidative Status, and Semen Quality of Healthy Dogs
por: Aiudi, Giulio G., et al.
Publicado: (2022)

Development of split-root assays for loblolly pine (Pinus taeda L.) seedlings to study ectomycorrhizal symbioses
por: Rose, Benjamin D., et al.
Publicado: (2023)

Effects of Soil Microbes on Functional Traits of Loblolly Pine (Pinus taeda) Seedling Families From Contrasting Climates
por: Ulrich, Danielle E. M., et al.
Publicado: (2020)

Effect of Loblolly Pine (Pinus taeda L.) Hemicellulose Structure on the Properties of Hemicellulose-Polyvinyl Alcohol Composite Film
por: Pan, Huaizhi, et al.
Publicado: (2022)

Targeted and untargeted metabolomics reveals deep analysis of drought stress responses in needles and roots of Pinus taeda seedlings
por: Wu, Chu, et al.
Publicado: (2023)

Genomic Estimated Breeding Values Using Genomic Relationship Matrices in a Cloned Population of Loblolly Pine
por: Zapata-Valenzuela, Jaime, et al.
Publicado: (2013)

Switchgrass (Panicum virgatum) Intercropping within Managed Loblolly Pine (Pinus taeda) Does Not Affect Wild Bee Communities
por: Campbell, Joshua W., et al.
Publicado: (2016)

A High-Density Gene Map of Loblolly Pine (Pinus taeda L.) Based on Exome Sequence Capture Genotyping
por: Neves, Leandro Gomide, et al.
Publicado: (2013)

Integrated Analysis of the Transcriptome and Metabolome Reveals Genes Involved in Terpenoid and Flavonoid Biosynthesis in the Loblolly Pine (Pinus taeda L.)
por: Mao, Jipeng, et al.
Publicado: (2021)

Genomic selection in loblolly pine - from lab to field
por: Isik, Fikret, et al.
Publicado: (2011)

Chromosome-level reference genome of stinkwort, Dittrichia graveolens (L.) Greuter: A resource for studies on invasion, range expansion, and evolutionary adaptation under global change
por: McEvoy, Susan L, et al.
Publicado: (2023)

Dry-Aged Beef Steaks: Effect of Dietary Supplementation with Pinus taeda Hydrolyzed Lignin on Sensory Profile, Colorimetric and Oxidative Stability
por: Maggiolino, Aristide, et al.
Publicado: (2021)

Landscapes, genomics and transgenic conifers /
Publicado: (2006)

A Thousand Fly Genomes: An Expanded Drosophila Genome Nexus
por: Lack, Justin B., et al.
Publicado: (2016)

Somatic Embryogenesis in Selected Conifer Trees Pinus nigra Arn. and Abies Hybrids
por: Salaj, Terézia, et al.
Publicado: (2019)

GenomeVIP: a cloud platform for genomic variant discovery and interpretation
por: Mashl, R. Jay, et al.
Publicado: (2017)

Involvement of Pinus taeda MYB1 and MYB8 in phenylpropanoid metabolism and secondary cell wall biogenesis: a comparative in planta analysis
por: Bomal, Claude, et al.
Publicado: (2008)

Cannot write session to /tmp/vufind_sessions/sess_8khkou80aedu0401bn8enbk5ua