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High-Dimensional Mediation Analysis With Confounders in Survival Models
Mediation analysis is a common statistical method for investigating the mechanism of environmental exposures on health outcomes. Previous studies have extended mediation models with a single mediator to high-dimensional mediators selection. It is often assumed that there are no confounders that infl...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8273300/ https://www.ncbi.nlm.nih.gov/pubmed/34262599 http://dx.doi.org/10.3389/fgene.2021.688871 |
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author | Yu, Zhangsheng Cui, Yidan Wei, Ting Ma, Yanran Luo, Chengwen |
author_facet | Yu, Zhangsheng Cui, Yidan Wei, Ting Ma, Yanran Luo, Chengwen |
author_sort | Yu, Zhangsheng |
collection | PubMed |
description | Mediation analysis is a common statistical method for investigating the mechanism of environmental exposures on health outcomes. Previous studies have extended mediation models with a single mediator to high-dimensional mediators selection. It is often assumed that there are no confounders that influence the relations among the exposure, mediator, and outcome. This is not realistic for the observational studies. To accommodate the potential confounders, we propose a concise and efficient high-dimensional mediation analysis procedure using the propensity score for adjustment. Results from simulation studies demonstrate the proposed procedure has good performance in mediator selection and effect estimation compared with methods that ignore all confounders. Of note, as the sample size increases, the performance of variable selection and mediation effect estimation is as well as the results shown in the method which include all confounders as covariates in the mediation model. By applying this procedure to a TCGA lung cancer data set, we find that lung cancer patients who had serious smoking history have increased the risk of death via the methylation markers cg21926276 and cg20707991 with significant hazard ratios of 1.2093 (95% CI: 1.2019–1.2167) and 1.1388 (95% CI: 1.1339–1.1438), respectively. |
format | Online Article Text |
id | pubmed-8273300 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-82733002021-07-13 High-Dimensional Mediation Analysis With Confounders in Survival Models Yu, Zhangsheng Cui, Yidan Wei, Ting Ma, Yanran Luo, Chengwen Front Genet Genetics Mediation analysis is a common statistical method for investigating the mechanism of environmental exposures on health outcomes. Previous studies have extended mediation models with a single mediator to high-dimensional mediators selection. It is often assumed that there are no confounders that influence the relations among the exposure, mediator, and outcome. This is not realistic for the observational studies. To accommodate the potential confounders, we propose a concise and efficient high-dimensional mediation analysis procedure using the propensity score for adjustment. Results from simulation studies demonstrate the proposed procedure has good performance in mediator selection and effect estimation compared with methods that ignore all confounders. Of note, as the sample size increases, the performance of variable selection and mediation effect estimation is as well as the results shown in the method which include all confounders as covariates in the mediation model. By applying this procedure to a TCGA lung cancer data set, we find that lung cancer patients who had serious smoking history have increased the risk of death via the methylation markers cg21926276 and cg20707991 with significant hazard ratios of 1.2093 (95% CI: 1.2019–1.2167) and 1.1388 (95% CI: 1.1339–1.1438), respectively. Frontiers Media S.A. 2021-06-28 /pmc/articles/PMC8273300/ /pubmed/34262599 http://dx.doi.org/10.3389/fgene.2021.688871 Text en Copyright © 2021 Yu, Cui, Wei, Ma and Luo. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Yu, Zhangsheng Cui, Yidan Wei, Ting Ma, Yanran Luo, Chengwen High-Dimensional Mediation Analysis With Confounders in Survival Models |
title | High-Dimensional Mediation Analysis With Confounders in Survival Models |
title_full | High-Dimensional Mediation Analysis With Confounders in Survival Models |
title_fullStr | High-Dimensional Mediation Analysis With Confounders in Survival Models |
title_full_unstemmed | High-Dimensional Mediation Analysis With Confounders in Survival Models |
title_short | High-Dimensional Mediation Analysis With Confounders in Survival Models |
title_sort | high-dimensional mediation analysis with confounders in survival models |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8273300/ https://www.ncbi.nlm.nih.gov/pubmed/34262599 http://dx.doi.org/10.3389/fgene.2021.688871 |
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