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Identification of Aging-Related Genes Associated With Clinical and Prognostic Features of Hepatocellular Carcinoma
Background: Aging is a well-studied concept, but no studies have comprehensively analyzed the association between aging-related genes (AGs) and hepatocellular carcinoma (HCC) prognosis. Methods: Gene candidates were selected from differentially expressed genes and prognostic genes in The Cancer Geno...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8274591/ https://www.ncbi.nlm.nih.gov/pubmed/34262594 http://dx.doi.org/10.3389/fgene.2021.661988 |
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author | Chen, Xingte Wang, Lei Hong, Liang Su, Zhixiong Zhong, Xiaohong Zhou, Han Zhang, Xueqing Wu, Junxin Shao, Lingdong |
author_facet | Chen, Xingte Wang, Lei Hong, Liang Su, Zhixiong Zhong, Xiaohong Zhou, Han Zhang, Xueqing Wu, Junxin Shao, Lingdong |
author_sort | Chen, Xingte |
collection | PubMed |
description | Background: Aging is a well-studied concept, but no studies have comprehensively analyzed the association between aging-related genes (AGs) and hepatocellular carcinoma (HCC) prognosis. Methods: Gene candidates were selected from differentially expressed genes and prognostic genes in The Cancer Genome Atlas (TCGA) database. A gene risk score for overall survival prediction was established using the least absolute shrinkage and selection operator (LASSO) regression analysis, and this was validated using data from the International Cancer Genome Consortium (ICGC) database. Functional analysis was conducted using gene ontology enrichment, Kyoto Encyclopedia of Genes and Genomes analysis, gene set enrichment analysis, and immune microenvironment and tumor stemness analyses. Results: Initially, 72 AGs from the TCGA database were screened as differentially expressed between normal and tumor tissues and as genes associated with HCC prognosis. Then, seven AGs (POLA1, CDK1, SOCS2, HDAC1, MAPT, RAE1, and EEF1E1) were identified using the LASSO regression analysis. The seven AGs were used to develop a risk score in the training set, and the risk was validated to have a significant prognostic value in the ICGC set (p < 0.05). Patients with high risk scores had lower tumor differentiation, higher stage, and worse prognosis (all p < 0.05). Multivariate Cox regression analyses also confirmed that the risk score was an independent prognostic factor for HCC in both the TCGA and ICGC sets (all p < 0.05). Further analysis showed that a high risk score was correlated with the downregulation of metabolism and tumor immunity. Conclusion: The risk score predicts HCC prognosis and could thus be used as a biomarker not only for predicting HCC prognosis but also for deciding on treatment. |
format | Online Article Text |
id | pubmed-8274591 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-82745912021-07-13 Identification of Aging-Related Genes Associated With Clinical and Prognostic Features of Hepatocellular Carcinoma Chen, Xingte Wang, Lei Hong, Liang Su, Zhixiong Zhong, Xiaohong Zhou, Han Zhang, Xueqing Wu, Junxin Shao, Lingdong Front Genet Genetics Background: Aging is a well-studied concept, but no studies have comprehensively analyzed the association between aging-related genes (AGs) and hepatocellular carcinoma (HCC) prognosis. Methods: Gene candidates were selected from differentially expressed genes and prognostic genes in The Cancer Genome Atlas (TCGA) database. A gene risk score for overall survival prediction was established using the least absolute shrinkage and selection operator (LASSO) regression analysis, and this was validated using data from the International Cancer Genome Consortium (ICGC) database. Functional analysis was conducted using gene ontology enrichment, Kyoto Encyclopedia of Genes and Genomes analysis, gene set enrichment analysis, and immune microenvironment and tumor stemness analyses. Results: Initially, 72 AGs from the TCGA database were screened as differentially expressed between normal and tumor tissues and as genes associated with HCC prognosis. Then, seven AGs (POLA1, CDK1, SOCS2, HDAC1, MAPT, RAE1, and EEF1E1) were identified using the LASSO regression analysis. The seven AGs were used to develop a risk score in the training set, and the risk was validated to have a significant prognostic value in the ICGC set (p < 0.05). Patients with high risk scores had lower tumor differentiation, higher stage, and worse prognosis (all p < 0.05). Multivariate Cox regression analyses also confirmed that the risk score was an independent prognostic factor for HCC in both the TCGA and ICGC sets (all p < 0.05). Further analysis showed that a high risk score was correlated with the downregulation of metabolism and tumor immunity. Conclusion: The risk score predicts HCC prognosis and could thus be used as a biomarker not only for predicting HCC prognosis but also for deciding on treatment. Frontiers Media S.A. 2021-06-23 /pmc/articles/PMC8274591/ /pubmed/34262594 http://dx.doi.org/10.3389/fgene.2021.661988 Text en Copyright © 2021 Chen, Wang, Hong, Su, Zhong, Zhou, Zhang, Wu and Shao. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Chen, Xingte Wang, Lei Hong, Liang Su, Zhixiong Zhong, Xiaohong Zhou, Han Zhang, Xueqing Wu, Junxin Shao, Lingdong Identification of Aging-Related Genes Associated With Clinical and Prognostic Features of Hepatocellular Carcinoma |
title | Identification of Aging-Related Genes Associated With Clinical and Prognostic Features of Hepatocellular Carcinoma |
title_full | Identification of Aging-Related Genes Associated With Clinical and Prognostic Features of Hepatocellular Carcinoma |
title_fullStr | Identification of Aging-Related Genes Associated With Clinical and Prognostic Features of Hepatocellular Carcinoma |
title_full_unstemmed | Identification of Aging-Related Genes Associated With Clinical and Prognostic Features of Hepatocellular Carcinoma |
title_short | Identification of Aging-Related Genes Associated With Clinical and Prognostic Features of Hepatocellular Carcinoma |
title_sort | identification of aging-related genes associated with clinical and prognostic features of hepatocellular carcinoma |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8274591/ https://www.ncbi.nlm.nih.gov/pubmed/34262594 http://dx.doi.org/10.3389/fgene.2021.661988 |
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