Cargando…

Identification of LecRLK gene family in Cerasus humilis through genomic-transcriptomic data mining and expression analyses

Lectin receptor-like protein kinases (LecRLKs) have been shown to be involved in plants’ responses to various biotic and abiotic stresse factors. Cerasus humilis is an important fruit species widely planted for soil and water conservation in northern China due to its strong tolerance to drought and...

Descripción completa

Detalles Bibliográficos
Autores principales: Han, Hongyan, Mu, Xiaopeng, Wang, Pengfei, Wang, Zewen, Fu, Hongbo, Gao, Yu Gary, Du, Junjie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8274838/
https://www.ncbi.nlm.nih.gov/pubmed/34252163
http://dx.doi.org/10.1371/journal.pone.0254535
_version_ 1783721612664635392
author Han, Hongyan
Mu, Xiaopeng
Wang, Pengfei
Wang, Zewen
Fu, Hongbo
Gao, Yu Gary
Du, Junjie
author_facet Han, Hongyan
Mu, Xiaopeng
Wang, Pengfei
Wang, Zewen
Fu, Hongbo
Gao, Yu Gary
Du, Junjie
author_sort Han, Hongyan
collection PubMed
description Lectin receptor-like protein kinases (LecRLKs) have been shown to be involved in plants’ responses to various biotic and abiotic stresse factors. Cerasus humilis is an important fruit species widely planted for soil and water conservation in northern China due to its strong tolerance to drought and salinity stresses. In this study, a total of 170 LecRLK family genes (125 G-types, 43 L-types and 2 C-types) were identified in the newly released whole-genome sequences of C. humilis. Furthermore, nine representative LecRLK genes in young plants of C. humilis under varying drought and salinity stresses were selected for qRT-PCR analysis. Our systematic comparative analyses revealed the active participation of these nine LecRLK genes in the salt and drought stress responses of C. humilis. The results from our study have provided a solid foundation for future functional verification of these LecRLK family genes and will likely help facilitate the more rapid and effective development of new stress resistant Cerasus humilis cultivars.
format Online
Article
Text
id pubmed-8274838
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-82748382021-07-27 Identification of LecRLK gene family in Cerasus humilis through genomic-transcriptomic data mining and expression analyses Han, Hongyan Mu, Xiaopeng Wang, Pengfei Wang, Zewen Fu, Hongbo Gao, Yu Gary Du, Junjie PLoS One Research Article Lectin receptor-like protein kinases (LecRLKs) have been shown to be involved in plants’ responses to various biotic and abiotic stresse factors. Cerasus humilis is an important fruit species widely planted for soil and water conservation in northern China due to its strong tolerance to drought and salinity stresses. In this study, a total of 170 LecRLK family genes (125 G-types, 43 L-types and 2 C-types) were identified in the newly released whole-genome sequences of C. humilis. Furthermore, nine representative LecRLK genes in young plants of C. humilis under varying drought and salinity stresses were selected for qRT-PCR analysis. Our systematic comparative analyses revealed the active participation of these nine LecRLK genes in the salt and drought stress responses of C. humilis. The results from our study have provided a solid foundation for future functional verification of these LecRLK family genes and will likely help facilitate the more rapid and effective development of new stress resistant Cerasus humilis cultivars. Public Library of Science 2021-07-12 /pmc/articles/PMC8274838/ /pubmed/34252163 http://dx.doi.org/10.1371/journal.pone.0254535 Text en © 2021 Han et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Han, Hongyan
Mu, Xiaopeng
Wang, Pengfei
Wang, Zewen
Fu, Hongbo
Gao, Yu Gary
Du, Junjie
Identification of LecRLK gene family in Cerasus humilis through genomic-transcriptomic data mining and expression analyses
title Identification of LecRLK gene family in Cerasus humilis through genomic-transcriptomic data mining and expression analyses
title_full Identification of LecRLK gene family in Cerasus humilis through genomic-transcriptomic data mining and expression analyses
title_fullStr Identification of LecRLK gene family in Cerasus humilis through genomic-transcriptomic data mining and expression analyses
title_full_unstemmed Identification of LecRLK gene family in Cerasus humilis through genomic-transcriptomic data mining and expression analyses
title_short Identification of LecRLK gene family in Cerasus humilis through genomic-transcriptomic data mining and expression analyses
title_sort identification of lecrlk gene family in cerasus humilis through genomic-transcriptomic data mining and expression analyses
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8274838/
https://www.ncbi.nlm.nih.gov/pubmed/34252163
http://dx.doi.org/10.1371/journal.pone.0254535
work_keys_str_mv AT hanhongyan identificationoflecrlkgenefamilyincerasushumilisthroughgenomictranscriptomicdataminingandexpressionanalyses
AT muxiaopeng identificationoflecrlkgenefamilyincerasushumilisthroughgenomictranscriptomicdataminingandexpressionanalyses
AT wangpengfei identificationoflecrlkgenefamilyincerasushumilisthroughgenomictranscriptomicdataminingandexpressionanalyses
AT wangzewen identificationoflecrlkgenefamilyincerasushumilisthroughgenomictranscriptomicdataminingandexpressionanalyses
AT fuhongbo identificationoflecrlkgenefamilyincerasushumilisthroughgenomictranscriptomicdataminingandexpressionanalyses
AT gaoyugary identificationoflecrlkgenefamilyincerasushumilisthroughgenomictranscriptomicdataminingandexpressionanalyses
AT dujunjie identificationoflecrlkgenefamilyincerasushumilisthroughgenomictranscriptomicdataminingandexpressionanalyses