Cuttlefish: fast, parallel and low-memory compaction of de Bruijn graphs from large-scale genome collections

MOTIVATION: The construction of the compacted de Bruijn graph from collections of reference genomes is a task of increasing interest in genomic analyses. These graphs are increasingly used as sequence indices for short- and long-read alignment. Also, as we sequence and assemble a greater diversity o...

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Detalles Bibliográficos
Autores principales: Khan, Jamshed, Patro, Rob
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Genome Sequence Analysis
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8275350/
https://www.ncbi.nlm.nih.gov/pubmed/34252958
http://dx.doi.org/10.1093/bioinformatics/btab309

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8275350/
https://www.ncbi.nlm.nih.gov/pubmed/34252958
http://dx.doi.org/10.1093/bioinformatics/btab309

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