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An interpretable multiple-instance approach for the detection of referable diabetic retinopathy in fundus images

Diabetic retinopathy (DR) is one of the leading causes of vision loss across the world. Yet despite its wide prevalence, the majority of affected people lack access to the specialized ophthalmologists and equipment required for monitoring their condition. This can lead to delays in the start of trea...

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Autores principales: Papadopoulos, Alexandros, Topouzis, Fotis, Delopoulos, Anastasios
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8275626/
https://www.ncbi.nlm.nih.gov/pubmed/34253799
http://dx.doi.org/10.1038/s41598-021-93632-8
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author Papadopoulos, Alexandros
Topouzis, Fotis
Delopoulos, Anastasios
author_facet Papadopoulos, Alexandros
Topouzis, Fotis
Delopoulos, Anastasios
author_sort Papadopoulos, Alexandros
collection PubMed
description Diabetic retinopathy (DR) is one of the leading causes of vision loss across the world. Yet despite its wide prevalence, the majority of affected people lack access to the specialized ophthalmologists and equipment required for monitoring their condition. This can lead to delays in the start of treatment, thereby lowering their chances for a successful outcome. Machine learning systems that automatically detect the disease in eye fundus images have been proposed as a means of facilitating access to retinopathy severity estimates for patients in remote regions or even for complementing the human expert’s diagnosis. Here we propose a machine learning system for the detection of referable diabetic retinopathy in fundus images, which is based on the paradigm of multiple-instance learning. Our method extracts local information independently from multiple rectangular image patches and combines it efficiently through an attention mechanism that focuses on the abnormal regions of the eye (i.e. those that contain DR-induced lesions), thus resulting in a final image representation that is suitable for classification. Furthermore, by leveraging the attention mechanism our algorithm can seamlessly produce informative heatmaps that highlight the regions where the lesions are located. We evaluate our approach on the publicly available Kaggle, Messidor-2 and IDRiD retinal image datasets, in which it exhibits near state-of-the-art classification performance (AUC of 0.961 in Kaggle and 0.976 in Messidor-2), while also producing valid lesion heatmaps (AUPRC of 0.869 in the 81 images of IDRiD that contain pixel-level lesion annotations). Our results suggest that the proposed approach provides an efficient and interpretable solution against the problem of automated diabetic retinopathy grading.
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spelling pubmed-82756262021-07-13 An interpretable multiple-instance approach for the detection of referable diabetic retinopathy in fundus images Papadopoulos, Alexandros Topouzis, Fotis Delopoulos, Anastasios Sci Rep Article Diabetic retinopathy (DR) is one of the leading causes of vision loss across the world. Yet despite its wide prevalence, the majority of affected people lack access to the specialized ophthalmologists and equipment required for monitoring their condition. This can lead to delays in the start of treatment, thereby lowering their chances for a successful outcome. Machine learning systems that automatically detect the disease in eye fundus images have been proposed as a means of facilitating access to retinopathy severity estimates for patients in remote regions or even for complementing the human expert’s diagnosis. Here we propose a machine learning system for the detection of referable diabetic retinopathy in fundus images, which is based on the paradigm of multiple-instance learning. Our method extracts local information independently from multiple rectangular image patches and combines it efficiently through an attention mechanism that focuses on the abnormal regions of the eye (i.e. those that contain DR-induced lesions), thus resulting in a final image representation that is suitable for classification. Furthermore, by leveraging the attention mechanism our algorithm can seamlessly produce informative heatmaps that highlight the regions where the lesions are located. We evaluate our approach on the publicly available Kaggle, Messidor-2 and IDRiD retinal image datasets, in which it exhibits near state-of-the-art classification performance (AUC of 0.961 in Kaggle and 0.976 in Messidor-2), while also producing valid lesion heatmaps (AUPRC of 0.869 in the 81 images of IDRiD that contain pixel-level lesion annotations). Our results suggest that the proposed approach provides an efficient and interpretable solution against the problem of automated diabetic retinopathy grading. Nature Publishing Group UK 2021-07-12 /pmc/articles/PMC8275626/ /pubmed/34253799 http://dx.doi.org/10.1038/s41598-021-93632-8 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Papadopoulos, Alexandros
Topouzis, Fotis
Delopoulos, Anastasios
An interpretable multiple-instance approach for the detection of referable diabetic retinopathy in fundus images
title An interpretable multiple-instance approach for the detection of referable diabetic retinopathy in fundus images
title_full An interpretable multiple-instance approach for the detection of referable diabetic retinopathy in fundus images
title_fullStr An interpretable multiple-instance approach for the detection of referable diabetic retinopathy in fundus images
title_full_unstemmed An interpretable multiple-instance approach for the detection of referable diabetic retinopathy in fundus images
title_short An interpretable multiple-instance approach for the detection of referable diabetic retinopathy in fundus images
title_sort interpretable multiple-instance approach for the detection of referable diabetic retinopathy in fundus images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8275626/
https://www.ncbi.nlm.nih.gov/pubmed/34253799
http://dx.doi.org/10.1038/s41598-021-93632-8
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