Cargando…

Construction and Validation of a Novel Eight-Gene Risk Signature to Predict the Progression and Prognosis of Bladder Cancer

The progression from non-muscle-invasive bladder cancer (NMIBC) to muscle-invasive bladder cancer (MIBC) increases the risk of death. It is therefore important to find new relevant molecular models that will allow for effective prediction of the progression and prognosis of bladder cancer (BC). Usin...

Descripción completa

Detalles Bibliográficos
Autores principales: Wang, Ruiliang, Zheng, Zongtai, Mao, Shiyu, Zhang, Wentao, Liu, Ji, Li, Cheng, Liu, Shenghua, Yao, Xudong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8276675/
https://www.ncbi.nlm.nih.gov/pubmed/34268106
http://dx.doi.org/10.3389/fonc.2021.632459
_version_ 1783721946643431424
author Wang, Ruiliang
Zheng, Zongtai
Mao, Shiyu
Zhang, Wentao
Liu, Ji
Li, Cheng
Liu, Shenghua
Yao, Xudong
author_facet Wang, Ruiliang
Zheng, Zongtai
Mao, Shiyu
Zhang, Wentao
Liu, Ji
Li, Cheng
Liu, Shenghua
Yao, Xudong
author_sort Wang, Ruiliang
collection PubMed
description The progression from non-muscle-invasive bladder cancer (NMIBC) to muscle-invasive bladder cancer (MIBC) increases the risk of death. It is therefore important to find new relevant molecular models that will allow for effective prediction of the progression and prognosis of bladder cancer (BC). Using RNA-Sequence data of 49 BC patients in Shanghai tenth people’s hospital (STPH) and weighted gene co-expression network analysis methods, a co-expression network of genes was developed and three key modules associated with malignant progression were selected. Based on the genes in three key modules, an eight-gene risk signature was established using univariate Cox regression and the Least absolute shrinkage and selection operator Cox model in The Cancer Genome Atlas Program (TCGA) and validated in validation sets. Subsequently, a nomogram based on the risk signature was constructed for prognostic prediction. The mRNA and protein expression levels of eight genes in cell lines and tissues were further investigated. The novel eight-gene risk signature was closely related to the malignant clinical features of BC and could predict the prognosis of patients in the training dataset (TCGA) and four validation sets (GSE32894, GSE13507, IMvigor210 trial, and STPH). The nomogram showed good prognostic prediction and calibration. The mRNA and protein expression levels of the eight genes were differentially expressed in cell lines and tissues. In our study, we established a novel eight-gene risk signature that could predict the progression and prognoses of BC patients.
format Online
Article
Text
id pubmed-8276675
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-82766752021-07-14 Construction and Validation of a Novel Eight-Gene Risk Signature to Predict the Progression and Prognosis of Bladder Cancer Wang, Ruiliang Zheng, Zongtai Mao, Shiyu Zhang, Wentao Liu, Ji Li, Cheng Liu, Shenghua Yao, Xudong Front Oncol Oncology The progression from non-muscle-invasive bladder cancer (NMIBC) to muscle-invasive bladder cancer (MIBC) increases the risk of death. It is therefore important to find new relevant molecular models that will allow for effective prediction of the progression and prognosis of bladder cancer (BC). Using RNA-Sequence data of 49 BC patients in Shanghai tenth people’s hospital (STPH) and weighted gene co-expression network analysis methods, a co-expression network of genes was developed and three key modules associated with malignant progression were selected. Based on the genes in three key modules, an eight-gene risk signature was established using univariate Cox regression and the Least absolute shrinkage and selection operator Cox model in The Cancer Genome Atlas Program (TCGA) and validated in validation sets. Subsequently, a nomogram based on the risk signature was constructed for prognostic prediction. The mRNA and protein expression levels of eight genes in cell lines and tissues were further investigated. The novel eight-gene risk signature was closely related to the malignant clinical features of BC and could predict the prognosis of patients in the training dataset (TCGA) and four validation sets (GSE32894, GSE13507, IMvigor210 trial, and STPH). The nomogram showed good prognostic prediction and calibration. The mRNA and protein expression levels of the eight genes were differentially expressed in cell lines and tissues. In our study, we established a novel eight-gene risk signature that could predict the progression and prognoses of BC patients. Frontiers Media S.A. 2021-06-29 /pmc/articles/PMC8276675/ /pubmed/34268106 http://dx.doi.org/10.3389/fonc.2021.632459 Text en Copyright © 2021 Wang, Zheng, Mao, Zhang, Liu, Li, Liu and Yao https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Wang, Ruiliang
Zheng, Zongtai
Mao, Shiyu
Zhang, Wentao
Liu, Ji
Li, Cheng
Liu, Shenghua
Yao, Xudong
Construction and Validation of a Novel Eight-Gene Risk Signature to Predict the Progression and Prognosis of Bladder Cancer
title Construction and Validation of a Novel Eight-Gene Risk Signature to Predict the Progression and Prognosis of Bladder Cancer
title_full Construction and Validation of a Novel Eight-Gene Risk Signature to Predict the Progression and Prognosis of Bladder Cancer
title_fullStr Construction and Validation of a Novel Eight-Gene Risk Signature to Predict the Progression and Prognosis of Bladder Cancer
title_full_unstemmed Construction and Validation of a Novel Eight-Gene Risk Signature to Predict the Progression and Prognosis of Bladder Cancer
title_short Construction and Validation of a Novel Eight-Gene Risk Signature to Predict the Progression and Prognosis of Bladder Cancer
title_sort construction and validation of a novel eight-gene risk signature to predict the progression and prognosis of bladder cancer
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8276675/
https://www.ncbi.nlm.nih.gov/pubmed/34268106
http://dx.doi.org/10.3389/fonc.2021.632459
work_keys_str_mv AT wangruiliang constructionandvalidationofanoveleightgenerisksignaturetopredicttheprogressionandprognosisofbladdercancer
AT zhengzongtai constructionandvalidationofanoveleightgenerisksignaturetopredicttheprogressionandprognosisofbladdercancer
AT maoshiyu constructionandvalidationofanoveleightgenerisksignaturetopredicttheprogressionandprognosisofbladdercancer
AT zhangwentao constructionandvalidationofanoveleightgenerisksignaturetopredicttheprogressionandprognosisofbladdercancer
AT liuji constructionandvalidationofanoveleightgenerisksignaturetopredicttheprogressionandprognosisofbladdercancer
AT licheng constructionandvalidationofanoveleightgenerisksignaturetopredicttheprogressionandprognosisofbladdercancer
AT liushenghua constructionandvalidationofanoveleightgenerisksignaturetopredicttheprogressionandprognosisofbladdercancer
AT yaoxudong constructionandvalidationofanoveleightgenerisksignaturetopredicttheprogressionandprognosisofbladdercancer