Cargando…

CAD systems for colorectal cancer from WSI are still not ready for clinical acceptance

Most oncological cases can be detected by imaging techniques, but diagnosis is based on pathological assessment of tissue samples. In recent years, the pathology field has evolved to a digital era where tissue samples are digitised and evaluated on screen. As a result, digital pathology opened up ma...

Descripción completa

Detalles Bibliográficos
Autores principales: Oliveira, Sara P., Neto, Pedro C., Fraga, João, Montezuma, Diana, Monteiro, Ana, Monteiro, João, Ribeiro, Liliana, Gonçalves, Sofia, Pinto, Isabel M., Cardoso, Jaime S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8277780/
https://www.ncbi.nlm.nih.gov/pubmed/34257363
http://dx.doi.org/10.1038/s41598-021-93746-z
_version_ 1783722125682540544
author Oliveira, Sara P.
Neto, Pedro C.
Fraga, João
Montezuma, Diana
Monteiro, Ana
Monteiro, João
Ribeiro, Liliana
Gonçalves, Sofia
Pinto, Isabel M.
Cardoso, Jaime S.
author_facet Oliveira, Sara P.
Neto, Pedro C.
Fraga, João
Montezuma, Diana
Monteiro, Ana
Monteiro, João
Ribeiro, Liliana
Gonçalves, Sofia
Pinto, Isabel M.
Cardoso, Jaime S.
author_sort Oliveira, Sara P.
collection PubMed
description Most oncological cases can be detected by imaging techniques, but diagnosis is based on pathological assessment of tissue samples. In recent years, the pathology field has evolved to a digital era where tissue samples are digitised and evaluated on screen. As a result, digital pathology opened up many research opportunities, allowing the development of more advanced image processing techniques, as well as artificial intelligence (AI) methodologies. Nevertheless, despite colorectal cancer (CRC) being the second deadliest cancer type worldwide, with increasing incidence rates, the application of AI for CRC diagnosis, particularly on whole-slide images (WSI), is still a young field. In this review, we analyse some relevant works published on this particular task and highlight the limitations that hinder the application of these works in clinical practice. We also empirically investigate the feasibility of using weakly annotated datasets to support the development of computer-aided diagnosis systems for CRC from WSI. Our study underscores the need for large datasets in this field and the use of an appropriate learning methodology to gain the most benefit from partially annotated datasets. The CRC WSI dataset used in this study, containing 1,133 colorectal biopsy and polypectomy samples, is available upon reasonable request.
format Online
Article
Text
id pubmed-8277780
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-82777802021-07-15 CAD systems for colorectal cancer from WSI are still not ready for clinical acceptance Oliveira, Sara P. Neto, Pedro C. Fraga, João Montezuma, Diana Monteiro, Ana Monteiro, João Ribeiro, Liliana Gonçalves, Sofia Pinto, Isabel M. Cardoso, Jaime S. Sci Rep Article Most oncological cases can be detected by imaging techniques, but diagnosis is based on pathological assessment of tissue samples. In recent years, the pathology field has evolved to a digital era where tissue samples are digitised and evaluated on screen. As a result, digital pathology opened up many research opportunities, allowing the development of more advanced image processing techniques, as well as artificial intelligence (AI) methodologies. Nevertheless, despite colorectal cancer (CRC) being the second deadliest cancer type worldwide, with increasing incidence rates, the application of AI for CRC diagnosis, particularly on whole-slide images (WSI), is still a young field. In this review, we analyse some relevant works published on this particular task and highlight the limitations that hinder the application of these works in clinical practice. We also empirically investigate the feasibility of using weakly annotated datasets to support the development of computer-aided diagnosis systems for CRC from WSI. Our study underscores the need for large datasets in this field and the use of an appropriate learning methodology to gain the most benefit from partially annotated datasets. The CRC WSI dataset used in this study, containing 1,133 colorectal biopsy and polypectomy samples, is available upon reasonable request. Nature Publishing Group UK 2021-07-13 /pmc/articles/PMC8277780/ /pubmed/34257363 http://dx.doi.org/10.1038/s41598-021-93746-z Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Oliveira, Sara P.
Neto, Pedro C.
Fraga, João
Montezuma, Diana
Monteiro, Ana
Monteiro, João
Ribeiro, Liliana
Gonçalves, Sofia
Pinto, Isabel M.
Cardoso, Jaime S.
CAD systems for colorectal cancer from WSI are still not ready for clinical acceptance
title CAD systems for colorectal cancer from WSI are still not ready for clinical acceptance
title_full CAD systems for colorectal cancer from WSI are still not ready for clinical acceptance
title_fullStr CAD systems for colorectal cancer from WSI are still not ready for clinical acceptance
title_full_unstemmed CAD systems for colorectal cancer from WSI are still not ready for clinical acceptance
title_short CAD systems for colorectal cancer from WSI are still not ready for clinical acceptance
title_sort cad systems for colorectal cancer from wsi are still not ready for clinical acceptance
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8277780/
https://www.ncbi.nlm.nih.gov/pubmed/34257363
http://dx.doi.org/10.1038/s41598-021-93746-z
work_keys_str_mv AT oliveirasarap cadsystemsforcolorectalcancerfromwsiarestillnotreadyforclinicalacceptance
AT netopedroc cadsystemsforcolorectalcancerfromwsiarestillnotreadyforclinicalacceptance
AT fragajoao cadsystemsforcolorectalcancerfromwsiarestillnotreadyforclinicalacceptance
AT montezumadiana cadsystemsforcolorectalcancerfromwsiarestillnotreadyforclinicalacceptance
AT monteiroana cadsystemsforcolorectalcancerfromwsiarestillnotreadyforclinicalacceptance
AT monteirojoao cadsystemsforcolorectalcancerfromwsiarestillnotreadyforclinicalacceptance
AT ribeiroliliana cadsystemsforcolorectalcancerfromwsiarestillnotreadyforclinicalacceptance
AT goncalvessofia cadsystemsforcolorectalcancerfromwsiarestillnotreadyforclinicalacceptance
AT pintoisabelm cadsystemsforcolorectalcancerfromwsiarestillnotreadyforclinicalacceptance
AT cardosojaimes cadsystemsforcolorectalcancerfromwsiarestillnotreadyforclinicalacceptance