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Transcriptome wide analysis of long non‐coding RNA‐associated ceRNA regulatory circuits in psoriasis

Long non‐coding RNAs (lncRNAs) play critical roles in regulating immune‐associated diseases and chronic inflammatory disorders. Here, we found that lncRNAs involve in the pathogenesis of psoriasis through integrative analysis of RNA‐seq data sets from a psoriasis cohort. Then, lncRNA‐protein‐coding...

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Autores principales: Lin, Jingxia, Li, Xuefei, Zhang, Fangfei, Zhu, Lei, Chen, Yongfeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8278092/
https://www.ncbi.nlm.nih.gov/pubmed/34080300
http://dx.doi.org/10.1111/jcmm.16703
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author Lin, Jingxia
Li, Xuefei
Zhang, Fangfei
Zhu, Lei
Chen, Yongfeng
author_facet Lin, Jingxia
Li, Xuefei
Zhang, Fangfei
Zhu, Lei
Chen, Yongfeng
author_sort Lin, Jingxia
collection PubMed
description Long non‐coding RNAs (lncRNAs) play critical roles in regulating immune‐associated diseases and chronic inflammatory disorders. Here, we found that lncRNAs involve in the pathogenesis of psoriasis through integrative analysis of RNA‐seq data sets from a psoriasis cohort. Then, lncRNA‐protein‐coding genes (PCGs) co‐expression network analysis demonstrated that lncRNAs extensively interact with IFN‐γ signalling pathway‐associated genes. Further, we validated 3 lncRNAs associate with IFN‐γ signalling pathway activation upon IFN‐γ stimulated in HaCaT cells, and loss of function experiments indicate their functional roles in the activation of inflammatory cytokine genes. Additionally, microRNA target screening analysis showed that lncRNAs may regulate JAK/STAT pathway activity through complete endogenous RNA (ceRNA) mechanism. Further experimental validation of PRKCQ‐AS1/STAT1/miR‐545‐5p regulatory circuitry showed that lncRNAs regulate the expression of JAK/STAT signalling pathway genes through competing for miR‐545‐5p. In summary, our results demonstrated that dysregulation of lncRNA‐JAK/STAT pathway axis promotes the inflammation level in psoriasis and thus provide potential therapeutic targets for psoriasis treatments.
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spelling pubmed-82780922021-07-15 Transcriptome wide analysis of long non‐coding RNA‐associated ceRNA regulatory circuits in psoriasis Lin, Jingxia Li, Xuefei Zhang, Fangfei Zhu, Lei Chen, Yongfeng J Cell Mol Med Original Articles Long non‐coding RNAs (lncRNAs) play critical roles in regulating immune‐associated diseases and chronic inflammatory disorders. Here, we found that lncRNAs involve in the pathogenesis of psoriasis through integrative analysis of RNA‐seq data sets from a psoriasis cohort. Then, lncRNA‐protein‐coding genes (PCGs) co‐expression network analysis demonstrated that lncRNAs extensively interact with IFN‐γ signalling pathway‐associated genes. Further, we validated 3 lncRNAs associate with IFN‐γ signalling pathway activation upon IFN‐γ stimulated in HaCaT cells, and loss of function experiments indicate their functional roles in the activation of inflammatory cytokine genes. Additionally, microRNA target screening analysis showed that lncRNAs may regulate JAK/STAT pathway activity through complete endogenous RNA (ceRNA) mechanism. Further experimental validation of PRKCQ‐AS1/STAT1/miR‐545‐5p regulatory circuitry showed that lncRNAs regulate the expression of JAK/STAT signalling pathway genes through competing for miR‐545‐5p. In summary, our results demonstrated that dysregulation of lncRNA‐JAK/STAT pathway axis promotes the inflammation level in psoriasis and thus provide potential therapeutic targets for psoriasis treatments. John Wiley and Sons Inc. 2021-06-02 2021-07 /pmc/articles/PMC8278092/ /pubmed/34080300 http://dx.doi.org/10.1111/jcmm.16703 Text en © 2021 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Lin, Jingxia
Li, Xuefei
Zhang, Fangfei
Zhu, Lei
Chen, Yongfeng
Transcriptome wide analysis of long non‐coding RNA‐associated ceRNA regulatory circuits in psoriasis
title Transcriptome wide analysis of long non‐coding RNA‐associated ceRNA regulatory circuits in psoriasis
title_full Transcriptome wide analysis of long non‐coding RNA‐associated ceRNA regulatory circuits in psoriasis
title_fullStr Transcriptome wide analysis of long non‐coding RNA‐associated ceRNA regulatory circuits in psoriasis
title_full_unstemmed Transcriptome wide analysis of long non‐coding RNA‐associated ceRNA regulatory circuits in psoriasis
title_short Transcriptome wide analysis of long non‐coding RNA‐associated ceRNA regulatory circuits in psoriasis
title_sort transcriptome wide analysis of long non‐coding rna‐associated cerna regulatory circuits in psoriasis
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8278092/
https://www.ncbi.nlm.nih.gov/pubmed/34080300
http://dx.doi.org/10.1111/jcmm.16703
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