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Harmonic Infrared and Raman Spectra in Molecular Environments Using the Polarizable Embedding Model
[Image: see text] We present a fully analytic approach to calculate infrared (IR) and Raman spectra of molecules embedded in complex molecular environments modeled using the fragment-based polarizable embedding (PE) model. We provide the theory for the calculation of analytic second-order geometric...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8278393/ https://www.ncbi.nlm.nih.gov/pubmed/34009969 http://dx.doi.org/10.1021/acs.jctc.0c01323 |
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author | Dundas, Karen Oda Hjorth Minde Beerepoot, Maarten T. P. Ringholm, Magnus Reine, Simen Bast, Radovan List, Nanna Holmgaard Kongsted, Jacob Ruud, Kenneth Olsen, Jógvan Magnus Haugaard |
author_facet | Dundas, Karen Oda Hjorth Minde Beerepoot, Maarten T. P. Ringholm, Magnus Reine, Simen Bast, Radovan List, Nanna Holmgaard Kongsted, Jacob Ruud, Kenneth Olsen, Jógvan Magnus Haugaard |
author_sort | Dundas, Karen Oda Hjorth Minde |
collection | PubMed |
description | [Image: see text] We present a fully analytic approach to calculate infrared (IR) and Raman spectra of molecules embedded in complex molecular environments modeled using the fragment-based polarizable embedding (PE) model. We provide the theory for the calculation of analytic second-order geometric derivatives of molecular energies and first-order geometric derivatives of electric dipole moments and dipole–dipole polarizabilities within the PE model. The derivatives are implemented using a general open-ended response theory framework, thus allowing for an extension to higher-order derivatives. The embedding-potential parameters used to describe the environment in the PE model are derived through first-principles calculations, thus allowing a wide variety of systems to be modeled, including solvents, proteins, and other large and complex molecular environments. Here, we present proof-of-principle calculations of IR and Raman spectra of acetone in different solvents. This work is an important step toward calculating accurate vibrational spectra of molecules embedded in realistic environments. |
format | Online Article Text |
id | pubmed-8278393 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-82783932021-07-14 Harmonic Infrared and Raman Spectra in Molecular Environments Using the Polarizable Embedding Model Dundas, Karen Oda Hjorth Minde Beerepoot, Maarten T. P. Ringholm, Magnus Reine, Simen Bast, Radovan List, Nanna Holmgaard Kongsted, Jacob Ruud, Kenneth Olsen, Jógvan Magnus Haugaard J Chem Theory Comput [Image: see text] We present a fully analytic approach to calculate infrared (IR) and Raman spectra of molecules embedded in complex molecular environments modeled using the fragment-based polarizable embedding (PE) model. We provide the theory for the calculation of analytic second-order geometric derivatives of molecular energies and first-order geometric derivatives of electric dipole moments and dipole–dipole polarizabilities within the PE model. The derivatives are implemented using a general open-ended response theory framework, thus allowing for an extension to higher-order derivatives. The embedding-potential parameters used to describe the environment in the PE model are derived through first-principles calculations, thus allowing a wide variety of systems to be modeled, including solvents, proteins, and other large and complex molecular environments. Here, we present proof-of-principle calculations of IR and Raman spectra of acetone in different solvents. This work is an important step toward calculating accurate vibrational spectra of molecules embedded in realistic environments. American Chemical Society 2021-05-19 2021-06-08 /pmc/articles/PMC8278393/ /pubmed/34009969 http://dx.doi.org/10.1021/acs.jctc.0c01323 Text en © 2021 The Authors. Published by American Chemical Society Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Dundas, Karen Oda Hjorth Minde Beerepoot, Maarten T. P. Ringholm, Magnus Reine, Simen Bast, Radovan List, Nanna Holmgaard Kongsted, Jacob Ruud, Kenneth Olsen, Jógvan Magnus Haugaard Harmonic Infrared and Raman Spectra in Molecular Environments Using the Polarizable Embedding Model |
title | Harmonic Infrared and Raman Spectra in Molecular Environments
Using the Polarizable Embedding Model |
title_full | Harmonic Infrared and Raman Spectra in Molecular Environments
Using the Polarizable Embedding Model |
title_fullStr | Harmonic Infrared and Raman Spectra in Molecular Environments
Using the Polarizable Embedding Model |
title_full_unstemmed | Harmonic Infrared and Raman Spectra in Molecular Environments
Using the Polarizable Embedding Model |
title_short | Harmonic Infrared and Raman Spectra in Molecular Environments
Using the Polarizable Embedding Model |
title_sort | harmonic infrared and raman spectra in molecular environments
using the polarizable embedding model |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8278393/ https://www.ncbi.nlm.nih.gov/pubmed/34009969 http://dx.doi.org/10.1021/acs.jctc.0c01323 |
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