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Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes

The unambiguous application of fungal names is important to communicate scientific findings. Names are critical for (clinical) diagnostics, legal compliance, and regulatory controls, such as biosafety, food security, quarantine regulations, and industrial applications. Consequently, the stability of...

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Autores principales: Yurkov, Andrey, Alves, Artur, Bai, Feng-Yan, Boundy-Mills, Kyria, Buzzini, Pietro, Čadež, Neža, Cardinali, Gianluigi, Casaregola, Serge, Chaturvedi, Vishnu, Collin, Valérie, Fell, Jack W., Girard, Victoria, Groenewald, Marizeth, Hagen, Ferry, Hittinger, Chris Todd, Kachalkin, Aleksey V., Kostrzewa, Markus, Kouvelis, Vassili, Libkind, Diego, Liu, Xinzhan, Maier, Thomas, Meyer, Wieland, Péter, Gábor, Piątek, Marcin, Robert, Vincent, Rosa, Carlos A., Sampaio, Jose Paulo, Sipiczki, Matthias, Stadler, Marc, Sugita, Takashi, Sugiyama, Junta, Takagi, Hiroshi, Takashima, Masako, Turchetti, Benedetta, Wang, Qi-Ming, Boekhout, Teun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8278710/
https://www.ncbi.nlm.nih.gov/pubmed/34256869
http://dx.doi.org/10.1186/s43008-021-00067-x
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author Yurkov, Andrey
Alves, Artur
Bai, Feng-Yan
Boundy-Mills, Kyria
Buzzini, Pietro
Čadež, Neža
Cardinali, Gianluigi
Casaregola, Serge
Chaturvedi, Vishnu
Collin, Valérie
Fell, Jack W.
Girard, Victoria
Groenewald, Marizeth
Hagen, Ferry
Hittinger, Chris Todd
Kachalkin, Aleksey V.
Kostrzewa, Markus
Kouvelis, Vassili
Libkind, Diego
Liu, Xinzhan
Maier, Thomas
Meyer, Wieland
Péter, Gábor
Piątek, Marcin
Robert, Vincent
Rosa, Carlos A.
Sampaio, Jose Paulo
Sipiczki, Matthias
Stadler, Marc
Sugita, Takashi
Sugiyama, Junta
Takagi, Hiroshi
Takashima, Masako
Turchetti, Benedetta
Wang, Qi-Ming
Boekhout, Teun
author_facet Yurkov, Andrey
Alves, Artur
Bai, Feng-Yan
Boundy-Mills, Kyria
Buzzini, Pietro
Čadež, Neža
Cardinali, Gianluigi
Casaregola, Serge
Chaturvedi, Vishnu
Collin, Valérie
Fell, Jack W.
Girard, Victoria
Groenewald, Marizeth
Hagen, Ferry
Hittinger, Chris Todd
Kachalkin, Aleksey V.
Kostrzewa, Markus
Kouvelis, Vassili
Libkind, Diego
Liu, Xinzhan
Maier, Thomas
Meyer, Wieland
Péter, Gábor
Piątek, Marcin
Robert, Vincent
Rosa, Carlos A.
Sampaio, Jose Paulo
Sipiczki, Matthias
Stadler, Marc
Sugita, Takashi
Sugiyama, Junta
Takagi, Hiroshi
Takashima, Masako
Turchetti, Benedetta
Wang, Qi-Ming
Boekhout, Teun
author_sort Yurkov, Andrey
collection PubMed
description The unambiguous application of fungal names is important to communicate scientific findings. Names are critical for (clinical) diagnostics, legal compliance, and regulatory controls, such as biosafety, food security, quarantine regulations, and industrial applications. Consequently, the stability of the taxonomic system and the traceability of nomenclatural changes is crucial for a broad range of users and taxonomists. The unambiguous application of names is assured by the preservation of nomenclatural history and the physical organisms representing a name. Fungi are extremely diverse in terms of ecology, lifestyle, and methods of study. Predominantly unicellular fungi known as yeasts are usually investigated as living cultures. Methods to characterize yeasts include physiological (growth) tests and experiments to induce a sexual morph; both methods require viable cultures. Thus, the preservation and availability of viable reference cultures are important, and cultures representing reference material are cited in species descriptions. Historical surveys revealed drawbacks and inconsistencies between past practices and modern requirements as stated in the International Code of Nomenclature for Algae, Fungi, and Plants (ICNafp). Improper typification of yeasts is a common problem, resulting in a large number invalid yeast species names. With this opinion letter, we address the problem that culturable microorganisms, notably some fungi and algae, require specific provisions under the ICNafp. We use yeasts as a prominent example of fungi known from cultures. But viable type material is important not only for yeasts, but also for other cultivable Fungi that are characterized by particular morphological structures (a specific type of spores), growth properties, and secondary metabolites. We summarize potential proposals which, in our opinion, will improve the stability of fungal names, in particular by protecting those names for which the reference material can be traced back to the original isolate.
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spelling pubmed-82787102021-07-21 Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes Yurkov, Andrey Alves, Artur Bai, Feng-Yan Boundy-Mills, Kyria Buzzini, Pietro Čadež, Neža Cardinali, Gianluigi Casaregola, Serge Chaturvedi, Vishnu Collin, Valérie Fell, Jack W. Girard, Victoria Groenewald, Marizeth Hagen, Ferry Hittinger, Chris Todd Kachalkin, Aleksey V. Kostrzewa, Markus Kouvelis, Vassili Libkind, Diego Liu, Xinzhan Maier, Thomas Meyer, Wieland Péter, Gábor Piątek, Marcin Robert, Vincent Rosa, Carlos A. Sampaio, Jose Paulo Sipiczki, Matthias Stadler, Marc Sugita, Takashi Sugiyama, Junta Takagi, Hiroshi Takashima, Masako Turchetti, Benedetta Wang, Qi-Ming Boekhout, Teun IMA Fungus Nomenclature The unambiguous application of fungal names is important to communicate scientific findings. Names are critical for (clinical) diagnostics, legal compliance, and regulatory controls, such as biosafety, food security, quarantine regulations, and industrial applications. Consequently, the stability of the taxonomic system and the traceability of nomenclatural changes is crucial for a broad range of users and taxonomists. The unambiguous application of names is assured by the preservation of nomenclatural history and the physical organisms representing a name. Fungi are extremely diverse in terms of ecology, lifestyle, and methods of study. Predominantly unicellular fungi known as yeasts are usually investigated as living cultures. Methods to characterize yeasts include physiological (growth) tests and experiments to induce a sexual morph; both methods require viable cultures. Thus, the preservation and availability of viable reference cultures are important, and cultures representing reference material are cited in species descriptions. Historical surveys revealed drawbacks and inconsistencies between past practices and modern requirements as stated in the International Code of Nomenclature for Algae, Fungi, and Plants (ICNafp). Improper typification of yeasts is a common problem, resulting in a large number invalid yeast species names. With this opinion letter, we address the problem that culturable microorganisms, notably some fungi and algae, require specific provisions under the ICNafp. We use yeasts as a prominent example of fungi known from cultures. But viable type material is important not only for yeasts, but also for other cultivable Fungi that are characterized by particular morphological structures (a specific type of spores), growth properties, and secondary metabolites. We summarize potential proposals which, in our opinion, will improve the stability of fungal names, in particular by protecting those names for which the reference material can be traced back to the original isolate. BioMed Central 2021-07-13 /pmc/articles/PMC8278710/ /pubmed/34256869 http://dx.doi.org/10.1186/s43008-021-00067-x Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Nomenclature
Yurkov, Andrey
Alves, Artur
Bai, Feng-Yan
Boundy-Mills, Kyria
Buzzini, Pietro
Čadež, Neža
Cardinali, Gianluigi
Casaregola, Serge
Chaturvedi, Vishnu
Collin, Valérie
Fell, Jack W.
Girard, Victoria
Groenewald, Marizeth
Hagen, Ferry
Hittinger, Chris Todd
Kachalkin, Aleksey V.
Kostrzewa, Markus
Kouvelis, Vassili
Libkind, Diego
Liu, Xinzhan
Maier, Thomas
Meyer, Wieland
Péter, Gábor
Piątek, Marcin
Robert, Vincent
Rosa, Carlos A.
Sampaio, Jose Paulo
Sipiczki, Matthias
Stadler, Marc
Sugita, Takashi
Sugiyama, Junta
Takagi, Hiroshi
Takashima, Masako
Turchetti, Benedetta
Wang, Qi-Ming
Boekhout, Teun
Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes
title Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes
title_full Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes
title_fullStr Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes
title_full_unstemmed Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes
title_short Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes
title_sort nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes
topic Nomenclature
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8278710/
https://www.ncbi.nlm.nih.gov/pubmed/34256869
http://dx.doi.org/10.1186/s43008-021-00067-x
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