Cargando…

Complex Reaction Network Thermodynamic and Kinetic Autoconstruction Based on Ab Initio Statistical Mechanics: A Case Study of O(2) Activation on Ag(4) Clusters

[Image: see text] An approach based on ab initio statistical mechanics is demonstrated for autoconstructing complex reaction networks. Ab initio molecular dynamics combined with Markov state models are employed to study relevant transitions and corresponding thermodynamic and kinetic properties of a...

Descripción completa

Detalles Bibliográficos
Autores principales: Wang, Weiqi, Liu, Xiangyue, Pérez-Ríos, Jesús
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2021
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8279642/
https://www.ncbi.nlm.nih.gov/pubmed/34133164
http://dx.doi.org/10.1021/acs.jpca.1c03454
_version_ 1783722496421265408
author Wang, Weiqi
Liu, Xiangyue
Pérez-Ríos, Jesús
author_facet Wang, Weiqi
Liu, Xiangyue
Pérez-Ríos, Jesús
author_sort Wang, Weiqi
collection PubMed
description [Image: see text] An approach based on ab initio statistical mechanics is demonstrated for autoconstructing complex reaction networks. Ab initio molecular dynamics combined with Markov state models are employed to study relevant transitions and corresponding thermodynamic and kinetic properties of a reaction. To explore the capability and flexibility of this approach, we present a study of oxygen activation on Ag(4) as a model reaction. Specifically, with the same sampled trajectories, it is possible to study the structural effects and the reaction rate of the cited reaction. The results show that this approach is suitable for automatized construction of reaction networks, especially for non-well-studied reactions, which can benefit from this ab initio molecular dynamics based approach to construct comprehensive reaction networks with Markov state models without prior knowledge about the potential energy landscape.
format Online
Article
Text
id pubmed-8279642
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-82796422021-07-15 Complex Reaction Network Thermodynamic and Kinetic Autoconstruction Based on Ab Initio Statistical Mechanics: A Case Study of O(2) Activation on Ag(4) Clusters Wang, Weiqi Liu, Xiangyue Pérez-Ríos, Jesús J Phys Chem A [Image: see text] An approach based on ab initio statistical mechanics is demonstrated for autoconstructing complex reaction networks. Ab initio molecular dynamics combined with Markov state models are employed to study relevant transitions and corresponding thermodynamic and kinetic properties of a reaction. To explore the capability and flexibility of this approach, we present a study of oxygen activation on Ag(4) as a model reaction. Specifically, with the same sampled trajectories, it is possible to study the structural effects and the reaction rate of the cited reaction. The results show that this approach is suitable for automatized construction of reaction networks, especially for non-well-studied reactions, which can benefit from this ab initio molecular dynamics based approach to construct comprehensive reaction networks with Markov state models without prior knowledge about the potential energy landscape. American Chemical Society 2021-06-16 2021-07-01 /pmc/articles/PMC8279642/ /pubmed/34133164 http://dx.doi.org/10.1021/acs.jpca.1c03454 Text en © 2021 The Authors. Published by American Chemical Society Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Wang, Weiqi
Liu, Xiangyue
Pérez-Ríos, Jesús
Complex Reaction Network Thermodynamic and Kinetic Autoconstruction Based on Ab Initio Statistical Mechanics: A Case Study of O(2) Activation on Ag(4) Clusters
title Complex Reaction Network Thermodynamic and Kinetic Autoconstruction Based on Ab Initio Statistical Mechanics: A Case Study of O(2) Activation on Ag(4) Clusters
title_full Complex Reaction Network Thermodynamic and Kinetic Autoconstruction Based on Ab Initio Statistical Mechanics: A Case Study of O(2) Activation on Ag(4) Clusters
title_fullStr Complex Reaction Network Thermodynamic and Kinetic Autoconstruction Based on Ab Initio Statistical Mechanics: A Case Study of O(2) Activation on Ag(4) Clusters
title_full_unstemmed Complex Reaction Network Thermodynamic and Kinetic Autoconstruction Based on Ab Initio Statistical Mechanics: A Case Study of O(2) Activation on Ag(4) Clusters
title_short Complex Reaction Network Thermodynamic and Kinetic Autoconstruction Based on Ab Initio Statistical Mechanics: A Case Study of O(2) Activation on Ag(4) Clusters
title_sort complex reaction network thermodynamic and kinetic autoconstruction based on ab initio statistical mechanics: a case study of o(2) activation on ag(4) clusters
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8279642/
https://www.ncbi.nlm.nih.gov/pubmed/34133164
http://dx.doi.org/10.1021/acs.jpca.1c03454
work_keys_str_mv AT wangweiqi complexreactionnetworkthermodynamicandkineticautoconstructionbasedonabinitiostatisticalmechanicsacasestudyofo2activationonag4clusters
AT liuxiangyue complexreactionnetworkthermodynamicandkineticautoconstructionbasedonabinitiostatisticalmechanicsacasestudyofo2activationonag4clusters
AT perezriosjesus complexreactionnetworkthermodynamicandkineticautoconstructionbasedonabinitiostatisticalmechanicsacasestudyofo2activationonag4clusters