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Complex Reaction Network Thermodynamic and Kinetic Autoconstruction Based on Ab Initio Statistical Mechanics: A Case Study of O(2) Activation on Ag(4) Clusters
[Image: see text] An approach based on ab initio statistical mechanics is demonstrated for autoconstructing complex reaction networks. Ab initio molecular dynamics combined with Markov state models are employed to study relevant transitions and corresponding thermodynamic and kinetic properties of a...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8279642/ https://www.ncbi.nlm.nih.gov/pubmed/34133164 http://dx.doi.org/10.1021/acs.jpca.1c03454 |
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author | Wang, Weiqi Liu, Xiangyue Pérez-Ríos, Jesús |
author_facet | Wang, Weiqi Liu, Xiangyue Pérez-Ríos, Jesús |
author_sort | Wang, Weiqi |
collection | PubMed |
description | [Image: see text] An approach based on ab initio statistical mechanics is demonstrated for autoconstructing complex reaction networks. Ab initio molecular dynamics combined with Markov state models are employed to study relevant transitions and corresponding thermodynamic and kinetic properties of a reaction. To explore the capability and flexibility of this approach, we present a study of oxygen activation on Ag(4) as a model reaction. Specifically, with the same sampled trajectories, it is possible to study the structural effects and the reaction rate of the cited reaction. The results show that this approach is suitable for automatized construction of reaction networks, especially for non-well-studied reactions, which can benefit from this ab initio molecular dynamics based approach to construct comprehensive reaction networks with Markov state models without prior knowledge about the potential energy landscape. |
format | Online Article Text |
id | pubmed-8279642 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-82796422021-07-15 Complex Reaction Network Thermodynamic and Kinetic Autoconstruction Based on Ab Initio Statistical Mechanics: A Case Study of O(2) Activation on Ag(4) Clusters Wang, Weiqi Liu, Xiangyue Pérez-Ríos, Jesús J Phys Chem A [Image: see text] An approach based on ab initio statistical mechanics is demonstrated for autoconstructing complex reaction networks. Ab initio molecular dynamics combined with Markov state models are employed to study relevant transitions and corresponding thermodynamic and kinetic properties of a reaction. To explore the capability and flexibility of this approach, we present a study of oxygen activation on Ag(4) as a model reaction. Specifically, with the same sampled trajectories, it is possible to study the structural effects and the reaction rate of the cited reaction. The results show that this approach is suitable for automatized construction of reaction networks, especially for non-well-studied reactions, which can benefit from this ab initio molecular dynamics based approach to construct comprehensive reaction networks with Markov state models without prior knowledge about the potential energy landscape. American Chemical Society 2021-06-16 2021-07-01 /pmc/articles/PMC8279642/ /pubmed/34133164 http://dx.doi.org/10.1021/acs.jpca.1c03454 Text en © 2021 The Authors. Published by American Chemical Society Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Wang, Weiqi Liu, Xiangyue Pérez-Ríos, Jesús Complex Reaction Network Thermodynamic and Kinetic Autoconstruction Based on Ab Initio Statistical Mechanics: A Case Study of O(2) Activation on Ag(4) Clusters |
title | Complex Reaction Network Thermodynamic and Kinetic
Autoconstruction Based on Ab Initio Statistical Mechanics:
A Case Study of O(2) Activation on Ag(4) Clusters |
title_full | Complex Reaction Network Thermodynamic and Kinetic
Autoconstruction Based on Ab Initio Statistical Mechanics:
A Case Study of O(2) Activation on Ag(4) Clusters |
title_fullStr | Complex Reaction Network Thermodynamic and Kinetic
Autoconstruction Based on Ab Initio Statistical Mechanics:
A Case Study of O(2) Activation on Ag(4) Clusters |
title_full_unstemmed | Complex Reaction Network Thermodynamic and Kinetic
Autoconstruction Based on Ab Initio Statistical Mechanics:
A Case Study of O(2) Activation on Ag(4) Clusters |
title_short | Complex Reaction Network Thermodynamic and Kinetic
Autoconstruction Based on Ab Initio Statistical Mechanics:
A Case Study of O(2) Activation on Ag(4) Clusters |
title_sort | complex reaction network thermodynamic and kinetic
autoconstruction based on ab initio statistical mechanics:
a case study of o(2) activation on ag(4) clusters |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8279642/ https://www.ncbi.nlm.nih.gov/pubmed/34133164 http://dx.doi.org/10.1021/acs.jpca.1c03454 |
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