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Charge State Dependence of Amino Acid Propensity at Water Surface: Mechanisms Elucidated by Molecular Dynamics Simulations
[Image: see text] Atmospheric aerosols contain a variety of compounds, among them free amino acids and salt ions. The pH of the aerosol droplets depends on their origin and environment. Consequently, compounds like free amino acids found in the droplets will be at different charge states, since thes...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8279654/ https://www.ncbi.nlm.nih.gov/pubmed/34042438 http://dx.doi.org/10.1021/acs.jpca.0c10963 |
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author | Herboth, Radost Gopakumar, Geethanjali Caleman, Carl Wohlert, Malin |
author_facet | Herboth, Radost Gopakumar, Geethanjali Caleman, Carl Wohlert, Malin |
author_sort | Herboth, Radost |
collection | PubMed |
description | [Image: see text] Atmospheric aerosols contain a variety of compounds, among them free amino acids and salt ions. The pH of the aerosol droplets depends on their origin and environment. Consequently, compounds like free amino acids found in the droplets will be at different charge states, since these states to a great extent depend on the surrounding pH condition. In droplets of marine origin, amino acids are believed to drive salt ions to the water surface and a pH-dependent amino acid surface propensity will, therefore, indirectly affect many processes in atmospheric chemistry and physics such as for instance cloud condensation. To understand the surface propensity of glycine, valine, and phenylalanine at acidic, neutral, and basic pH, we used molecular dynamics (MD) simulations to investigate them at three different charge states in water. Their respective surface propensities were obtained by the means of a potential of mean force (PMF) in an umbrella sampling approach. Glycine was found to have no preference for the surface, while both valine and phenylalanine showed high propensities. Among the charge states of the surface-enriched ones, the cation, representing the amino acids at low pH, was found to have the highest affinity. Free energy decomposition revealed that the driving forces depend strongly on the nature of the amino acid and its charge state. In phenylalanine, the main factor was found to be a substantial entropy gain, likely related to the side chain, whereas in valine, hydrogen bonding to the functional groups leads to favorable energies and, in turn, affects the surface propensity. A significant gain in water–water enthalpy was seen for both valine and phenylalanine. |
format | Online Article Text |
id | pubmed-8279654 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-82796542021-07-15 Charge State Dependence of Amino Acid Propensity at Water Surface: Mechanisms Elucidated by Molecular Dynamics Simulations Herboth, Radost Gopakumar, Geethanjali Caleman, Carl Wohlert, Malin J Phys Chem A [Image: see text] Atmospheric aerosols contain a variety of compounds, among them free amino acids and salt ions. The pH of the aerosol droplets depends on their origin and environment. Consequently, compounds like free amino acids found in the droplets will be at different charge states, since these states to a great extent depend on the surrounding pH condition. In droplets of marine origin, amino acids are believed to drive salt ions to the water surface and a pH-dependent amino acid surface propensity will, therefore, indirectly affect many processes in atmospheric chemistry and physics such as for instance cloud condensation. To understand the surface propensity of glycine, valine, and phenylalanine at acidic, neutral, and basic pH, we used molecular dynamics (MD) simulations to investigate them at three different charge states in water. Their respective surface propensities were obtained by the means of a potential of mean force (PMF) in an umbrella sampling approach. Glycine was found to have no preference for the surface, while both valine and phenylalanine showed high propensities. Among the charge states of the surface-enriched ones, the cation, representing the amino acids at low pH, was found to have the highest affinity. Free energy decomposition revealed that the driving forces depend strongly on the nature of the amino acid and its charge state. In phenylalanine, the main factor was found to be a substantial entropy gain, likely related to the side chain, whereas in valine, hydrogen bonding to the functional groups leads to favorable energies and, in turn, affects the surface propensity. A significant gain in water–water enthalpy was seen for both valine and phenylalanine. American Chemical Society 2021-05-27 2021-06-10 /pmc/articles/PMC8279654/ /pubmed/34042438 http://dx.doi.org/10.1021/acs.jpca.0c10963 Text en © 2021 The Authors. Published by American Chemical Society Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Herboth, Radost Gopakumar, Geethanjali Caleman, Carl Wohlert, Malin Charge State Dependence of Amino Acid Propensity at Water Surface: Mechanisms Elucidated by Molecular Dynamics Simulations |
title | Charge State Dependence of Amino Acid Propensity at
Water Surface: Mechanisms Elucidated by Molecular Dynamics Simulations |
title_full | Charge State Dependence of Amino Acid Propensity at
Water Surface: Mechanisms Elucidated by Molecular Dynamics Simulations |
title_fullStr | Charge State Dependence of Amino Acid Propensity at
Water Surface: Mechanisms Elucidated by Molecular Dynamics Simulations |
title_full_unstemmed | Charge State Dependence of Amino Acid Propensity at
Water Surface: Mechanisms Elucidated by Molecular Dynamics Simulations |
title_short | Charge State Dependence of Amino Acid Propensity at
Water Surface: Mechanisms Elucidated by Molecular Dynamics Simulations |
title_sort | charge state dependence of amino acid propensity at
water surface: mechanisms elucidated by molecular dynamics simulations |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8279654/ https://www.ncbi.nlm.nih.gov/pubmed/34042438 http://dx.doi.org/10.1021/acs.jpca.0c10963 |
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