Genomic data of Leptospira interrogans HP358 isolated from rodent captured from the human leptospirosis suspected areas of Selangor state, Malaysia

The data provided in this article is the genomic sequence of new Leptospira isolate, Leptospira interrogans strain HP358 (L. interrogans HP358) isolated from rodent, Sundamys muelleri (S. muelleri), captured from the human leptospirosis suspected area, in forest environment, Hulu Perdik, Selangor. T...

Descripción completa

Detalles Bibliográficos
Autores principales: Philip, Noraini, Jani, Jaeyres, Azhari, Nurul Natasya, Sekawi, Zamberi, Neela, Vasantha Kumari
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Data Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8281603/
https://www.ncbi.nlm.nih.gov/pubmed/34295952
http://dx.doi.org/10.1016/j.dib.2021.107261
_version_ 1783722860516212736
author Philip, Noraini
Jani, Jaeyres
Azhari, Nurul Natasya
Sekawi, Zamberi
Neela, Vasantha Kumari
author_facet Philip, Noraini
Jani, Jaeyres
Azhari, Nurul Natasya
Sekawi, Zamberi
Neela, Vasantha Kumari
author_sort Philip, Noraini
collection PubMed
description The data provided in this article is the genomic sequence of new Leptospira isolate, Leptospira interrogans strain HP358 (L. interrogans HP358) isolated from rodent, Sundamys muelleri (S. muelleri), captured from the human leptospirosis suspected area, in forest environment, Hulu Perdik, Selangor. The kidney of the rodent was cultured, and the genomic DNA of pure Leptospira isolate was extracted and sequenced. The de novo assembly of genome generated 118 contigs with N50 of 133,176bp. The genome size of the L. interrogans HP358 was determined with a length of 4,808,724 and 35.01% G+C content with 229 subsystems, 5236 coding sequences and 39 RNAs. The whole genome shotgun project has been deposited in NCBI GenBank under the accession number JAFCYY000000000.1.
format Online
Article
Text
id pubmed-8281603
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-82816032021-07-21 Genomic data of Leptospira interrogans HP358 isolated from rodent captured from the human leptospirosis suspected areas of Selangor state, Malaysia Philip, Noraini Jani, Jaeyres Azhari, Nurul Natasya Sekawi, Zamberi Neela, Vasantha Kumari Data Brief Data Article The data provided in this article is the genomic sequence of new Leptospira isolate, Leptospira interrogans strain HP358 (L. interrogans HP358) isolated from rodent, Sundamys muelleri (S. muelleri), captured from the human leptospirosis suspected area, in forest environment, Hulu Perdik, Selangor. The kidney of the rodent was cultured, and the genomic DNA of pure Leptospira isolate was extracted and sequenced. The de novo assembly of genome generated 118 contigs with N50 of 133,176bp. The genome size of the L. interrogans HP358 was determined with a length of 4,808,724 and 35.01% G+C content with 229 subsystems, 5236 coding sequences and 39 RNAs. The whole genome shotgun project has been deposited in NCBI GenBank under the accession number JAFCYY000000000.1. Elsevier 2021-07-10 /pmc/articles/PMC8281603/ /pubmed/34295952 http://dx.doi.org/10.1016/j.dib.2021.107261 Text en © 2021 The Authors. Published by Elsevier Inc. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data Article
Philip, Noraini
Jani, Jaeyres
Azhari, Nurul Natasya
Sekawi, Zamberi
Neela, Vasantha Kumari
Genomic data of Leptospira interrogans HP358 isolated from rodent captured from the human leptospirosis suspected areas of Selangor state, Malaysia
title Genomic data of Leptospira interrogans HP358 isolated from rodent captured from the human leptospirosis suspected areas of Selangor state, Malaysia
title_full Genomic data of Leptospira interrogans HP358 isolated from rodent captured from the human leptospirosis suspected areas of Selangor state, Malaysia
title_fullStr Genomic data of Leptospira interrogans HP358 isolated from rodent captured from the human leptospirosis suspected areas of Selangor state, Malaysia
title_full_unstemmed Genomic data of Leptospira interrogans HP358 isolated from rodent captured from the human leptospirosis suspected areas of Selangor state, Malaysia
title_short Genomic data of Leptospira interrogans HP358 isolated from rodent captured from the human leptospirosis suspected areas of Selangor state, Malaysia
title_sort genomic data of leptospira interrogans hp358 isolated from rodent captured from the human leptospirosis suspected areas of selangor state, malaysia
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8281603/
https://www.ncbi.nlm.nih.gov/pubmed/34295952
http://dx.doi.org/10.1016/j.dib.2021.107261
work_keys_str_mv AT philipnoraini genomicdataofleptospirainterroganshp358isolatedfromrodentcapturedfromthehumanleptospirosissuspectedareasofselangorstatemalaysia
AT janijaeyres genomicdataofleptospirainterroganshp358isolatedfromrodentcapturedfromthehumanleptospirosissuspectedareasofselangorstatemalaysia
AT azharinurulnatasya genomicdataofleptospirainterroganshp358isolatedfromrodentcapturedfromthehumanleptospirosissuspectedareasofselangorstatemalaysia
AT sekawizamberi genomicdataofleptospirainterroganshp358isolatedfromrodentcapturedfromthehumanleptospirosissuspectedareasofselangorstatemalaysia
AT neelavasanthakumari genomicdataofleptospirainterroganshp358isolatedfromrodentcapturedfromthehumanleptospirosissuspectedareasofselangorstatemalaysia

Ejemplares similares