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DNA sonification for public engagement in bioinformatics

OBJECTIVE: Visualisation methods, primarily color-coded representation of sequence data, have been a predominant means of representation of DNA data. Algorithmic conversion of DNA sequence data to sound—sonification—represents an alternative means of representation that uses a different range of hum...

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Autores principales: Plaisier, Heleen, Meagher, Thomas R., Barker, Daniel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8281613/
https://www.ncbi.nlm.nih.gov/pubmed/34266480
http://dx.doi.org/10.1186/s13104-021-05685-7
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author Plaisier, Heleen
Meagher, Thomas R.
Barker, Daniel
author_facet Plaisier, Heleen
Meagher, Thomas R.
Barker, Daniel
author_sort Plaisier, Heleen
collection PubMed
description OBJECTIVE: Visualisation methods, primarily color-coded representation of sequence data, have been a predominant means of representation of DNA data. Algorithmic conversion of DNA sequence data to sound—sonification—represents an alternative means of representation that uses a different range of human sensory perception. We propose that sonification has value for public engagement with DNA sequence information because it has potential to be entertaining as well as informative. We conduct preliminary work to explore the potential of DNA sequence sonification in public engagement with bioinformatics. We apply a simple sonification technique for DNA, in which each DNA base is represented by a specific note. Additionally, a beat may be added to indicate codon boundaries or for musical effect. We report a brief analysis from public engagement events we conducted that featured this method of sonification. RESULTS: We report on use of DNA sequence sonification at two public events. Sonification has potential in public engagement with bioinformatics, both as a means of data representation and as a means to attract audience to a drop-in stand. We also discuss further directions for research on integration of sonification into bioinformatics public engagement and education.
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spelling pubmed-82816132021-07-16 DNA sonification for public engagement in bioinformatics Plaisier, Heleen Meagher, Thomas R. Barker, Daniel BMC Res Notes Research Note OBJECTIVE: Visualisation methods, primarily color-coded representation of sequence data, have been a predominant means of representation of DNA data. Algorithmic conversion of DNA sequence data to sound—sonification—represents an alternative means of representation that uses a different range of human sensory perception. We propose that sonification has value for public engagement with DNA sequence information because it has potential to be entertaining as well as informative. We conduct preliminary work to explore the potential of DNA sequence sonification in public engagement with bioinformatics. We apply a simple sonification technique for DNA, in which each DNA base is represented by a specific note. Additionally, a beat may be added to indicate codon boundaries or for musical effect. We report a brief analysis from public engagement events we conducted that featured this method of sonification. RESULTS: We report on use of DNA sequence sonification at two public events. Sonification has potential in public engagement with bioinformatics, both as a means of data representation and as a means to attract audience to a drop-in stand. We also discuss further directions for research on integration of sonification into bioinformatics public engagement and education. BioMed Central 2021-07-15 /pmc/articles/PMC8281613/ /pubmed/34266480 http://dx.doi.org/10.1186/s13104-021-05685-7 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Note
Plaisier, Heleen
Meagher, Thomas R.
Barker, Daniel
DNA sonification for public engagement in bioinformatics
title DNA sonification for public engagement in bioinformatics
title_full DNA sonification for public engagement in bioinformatics
title_fullStr DNA sonification for public engagement in bioinformatics
title_full_unstemmed DNA sonification for public engagement in bioinformatics
title_short DNA sonification for public engagement in bioinformatics
title_sort dna sonification for public engagement in bioinformatics
topic Research Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8281613/
https://www.ncbi.nlm.nih.gov/pubmed/34266480
http://dx.doi.org/10.1186/s13104-021-05685-7
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