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Charged aerosol detector response modeling for fatty acids based on experimental settings and molecular features: a machine learning approach

The charged aerosol detector (CAD) is the latest representative of aerosol-based detectors that generate a response independent of the analytes’ chemical structure. This study was aimed at accurately predicting the CAD response of homologous fatty acids under varying experimental conditions. Fatty a...

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Autores principales: Pawellek, Ruben, Krmar, Jovana, Leistner, Adrian, Djajić, Nevena, Otašević, Biljana, Protić, Ana, Holzgrabe, Ulrike
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8281619/
https://www.ncbi.nlm.nih.gov/pubmed/34266497
http://dx.doi.org/10.1186/s13321-021-00532-0
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author Pawellek, Ruben
Krmar, Jovana
Leistner, Adrian
Djajić, Nevena
Otašević, Biljana
Protić, Ana
Holzgrabe, Ulrike
author_facet Pawellek, Ruben
Krmar, Jovana
Leistner, Adrian
Djajić, Nevena
Otašević, Biljana
Protić, Ana
Holzgrabe, Ulrike
author_sort Pawellek, Ruben
collection PubMed
description The charged aerosol detector (CAD) is the latest representative of aerosol-based detectors that generate a response independent of the analytes’ chemical structure. This study was aimed at accurately predicting the CAD response of homologous fatty acids under varying experimental conditions. Fatty acids from C12 to C18 were used as model substances due to semivolatile characterics that caused non-uniform CAD behaviour. Considering both experimental conditions and molecular descriptors, a mixed quantitative structure–property relationship (QSPR) modeling was performed using Gradient Boosted Trees (GBT). The ensemble of 10 decisions trees (learning rate set at 0.55, the maximal depth set at 5, and the sample rate set at 1.0) was able to explain approximately 99% (Q(2): 0.987, RMSE: 0.051) of the observed variance in CAD responses. Validation using an external test compound confirmed the high predictive ability of the model established (R(2): 0.990, RMSEP: 0.050). With respect to the intrinsic attribute selection strategy, GBT used almost all independent variables during model building. Finally, it attributed the highest importance to the power function value, the flow rate of the mobile phase, evaporation temperature, the content of the organic solvent in the mobile phase and the molecular descriptors such as molecular weight (MW), Radial Distribution Function—080/weighted by mass (RDF080m) and average coefficient of the last eigenvector from distance/detour matrix (Ve2_D/Dt). The identification of the factors most relevant to the CAD responsiveness has contributed to a better understanding of the underlying mechanisms of signal generation. An increased CAD response that was obtained for acetone as organic modifier demonstrated its potential to replace the more expensive and environmentally harmful acetonitrile. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13321-021-00532-0.
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spelling pubmed-82816192021-07-16 Charged aerosol detector response modeling for fatty acids based on experimental settings and molecular features: a machine learning approach Pawellek, Ruben Krmar, Jovana Leistner, Adrian Djajić, Nevena Otašević, Biljana Protić, Ana Holzgrabe, Ulrike J Cheminform Research Article The charged aerosol detector (CAD) is the latest representative of aerosol-based detectors that generate a response independent of the analytes’ chemical structure. This study was aimed at accurately predicting the CAD response of homologous fatty acids under varying experimental conditions. Fatty acids from C12 to C18 were used as model substances due to semivolatile characterics that caused non-uniform CAD behaviour. Considering both experimental conditions and molecular descriptors, a mixed quantitative structure–property relationship (QSPR) modeling was performed using Gradient Boosted Trees (GBT). The ensemble of 10 decisions trees (learning rate set at 0.55, the maximal depth set at 5, and the sample rate set at 1.0) was able to explain approximately 99% (Q(2): 0.987, RMSE: 0.051) of the observed variance in CAD responses. Validation using an external test compound confirmed the high predictive ability of the model established (R(2): 0.990, RMSEP: 0.050). With respect to the intrinsic attribute selection strategy, GBT used almost all independent variables during model building. Finally, it attributed the highest importance to the power function value, the flow rate of the mobile phase, evaporation temperature, the content of the organic solvent in the mobile phase and the molecular descriptors such as molecular weight (MW), Radial Distribution Function—080/weighted by mass (RDF080m) and average coefficient of the last eigenvector from distance/detour matrix (Ve2_D/Dt). The identification of the factors most relevant to the CAD responsiveness has contributed to a better understanding of the underlying mechanisms of signal generation. An increased CAD response that was obtained for acetone as organic modifier demonstrated its potential to replace the more expensive and environmentally harmful acetonitrile. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13321-021-00532-0. Springer International Publishing 2021-07-15 /pmc/articles/PMC8281619/ /pubmed/34266497 http://dx.doi.org/10.1186/s13321-021-00532-0 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Article
Pawellek, Ruben
Krmar, Jovana
Leistner, Adrian
Djajić, Nevena
Otašević, Biljana
Protić, Ana
Holzgrabe, Ulrike
Charged aerosol detector response modeling for fatty acids based on experimental settings and molecular features: a machine learning approach
title Charged aerosol detector response modeling for fatty acids based on experimental settings and molecular features: a machine learning approach
title_full Charged aerosol detector response modeling for fatty acids based on experimental settings and molecular features: a machine learning approach
title_fullStr Charged aerosol detector response modeling for fatty acids based on experimental settings and molecular features: a machine learning approach
title_full_unstemmed Charged aerosol detector response modeling for fatty acids based on experimental settings and molecular features: a machine learning approach
title_short Charged aerosol detector response modeling for fatty acids based on experimental settings and molecular features: a machine learning approach
title_sort charged aerosol detector response modeling for fatty acids based on experimental settings and molecular features: a machine learning approach
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8281619/
https://www.ncbi.nlm.nih.gov/pubmed/34266497
http://dx.doi.org/10.1186/s13321-021-00532-0
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