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A fuzzy rank-based ensemble of CNN models for classification of cervical cytology

Cervical cancer affects more than 0.5 million women annually causing more than 0.3 million deaths. Detection of cancer in its early stages is of prime importance for eradicating the disease from the patient’s body. However, regular population-wise screening of cancer is limited by its expensive and...

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Autores principales: Manna, Ankur, Kundu, Rohit, Kaplun, Dmitrii, Sinitca, Aleksandr, Sarkar, Ram
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8282795/
https://www.ncbi.nlm.nih.gov/pubmed/34267261
http://dx.doi.org/10.1038/s41598-021-93783-8
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author Manna, Ankur
Kundu, Rohit
Kaplun, Dmitrii
Sinitca, Aleksandr
Sarkar, Ram
author_facet Manna, Ankur
Kundu, Rohit
Kaplun, Dmitrii
Sinitca, Aleksandr
Sarkar, Ram
author_sort Manna, Ankur
collection PubMed
description Cervical cancer affects more than 0.5 million women annually causing more than 0.3 million deaths. Detection of cancer in its early stages is of prime importance for eradicating the disease from the patient’s body. However, regular population-wise screening of cancer is limited by its expensive and labour intensive detection process, where clinicians need to classify individual cells from a stained slide consisting of more than 100,000 cervical cells, for malignancy detection. Thus, Computer-Aided Diagnosis (CAD) systems are used as a viable alternative for easy and fast detection of cancer. In this paper, we develop such a method where we form an ensemble-based classification model using three Convolutional Neural Network (CNN) architectures, namely Inception v3, Xception and DenseNet-169 pre-trained on ImageNet dataset for Pap stained single cell and whole-slide image classification. The proposed ensemble scheme uses a fuzzy rank-based fusion of classifiers by considering two non-linear functions on the decision scores generated by said base learners. Unlike the simple fusion schemes that exist in the literature, the proposed ensemble technique makes the final predictions on the test samples by taking into consideration the confidence in the predictions of the base classifiers. The proposed model has been evaluated on two publicly available benchmark datasets, namely, the SIPaKMeD Pap Smear dataset and the Mendeley Liquid Based Cytology (LBC) dataset, using a 5-fold cross-validation scheme. On the SIPaKMeD Pap Smear dataset, the proposed framework achieves a classification accuracy of 98.55% and sensitivity of 98.52% in its 2-class setting, and 95.43% accuracy and 98.52% sensitivity in its 5-class setting. On the Mendeley LBC dataset, the accuracy achieved is 99.23% and sensitivity of 99.23%. The results obtained outperform many of the state-of-the-art models, thereby justifying the effectiveness of the same. The relevant codes of this proposed model are publicly available on GitHub.
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spelling pubmed-82827952021-07-19 A fuzzy rank-based ensemble of CNN models for classification of cervical cytology Manna, Ankur Kundu, Rohit Kaplun, Dmitrii Sinitca, Aleksandr Sarkar, Ram Sci Rep Article Cervical cancer affects more than 0.5 million women annually causing more than 0.3 million deaths. Detection of cancer in its early stages is of prime importance for eradicating the disease from the patient’s body. However, regular population-wise screening of cancer is limited by its expensive and labour intensive detection process, where clinicians need to classify individual cells from a stained slide consisting of more than 100,000 cervical cells, for malignancy detection. Thus, Computer-Aided Diagnosis (CAD) systems are used as a viable alternative for easy and fast detection of cancer. In this paper, we develop such a method where we form an ensemble-based classification model using three Convolutional Neural Network (CNN) architectures, namely Inception v3, Xception and DenseNet-169 pre-trained on ImageNet dataset for Pap stained single cell and whole-slide image classification. The proposed ensemble scheme uses a fuzzy rank-based fusion of classifiers by considering two non-linear functions on the decision scores generated by said base learners. Unlike the simple fusion schemes that exist in the literature, the proposed ensemble technique makes the final predictions on the test samples by taking into consideration the confidence in the predictions of the base classifiers. The proposed model has been evaluated on two publicly available benchmark datasets, namely, the SIPaKMeD Pap Smear dataset and the Mendeley Liquid Based Cytology (LBC) dataset, using a 5-fold cross-validation scheme. On the SIPaKMeD Pap Smear dataset, the proposed framework achieves a classification accuracy of 98.55% and sensitivity of 98.52% in its 2-class setting, and 95.43% accuracy and 98.52% sensitivity in its 5-class setting. On the Mendeley LBC dataset, the accuracy achieved is 99.23% and sensitivity of 99.23%. The results obtained outperform many of the state-of-the-art models, thereby justifying the effectiveness of the same. The relevant codes of this proposed model are publicly available on GitHub. Nature Publishing Group UK 2021-07-15 /pmc/articles/PMC8282795/ /pubmed/34267261 http://dx.doi.org/10.1038/s41598-021-93783-8 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Manna, Ankur
Kundu, Rohit
Kaplun, Dmitrii
Sinitca, Aleksandr
Sarkar, Ram
A fuzzy rank-based ensemble of CNN models for classification of cervical cytology
title A fuzzy rank-based ensemble of CNN models for classification of cervical cytology
title_full A fuzzy rank-based ensemble of CNN models for classification of cervical cytology
title_fullStr A fuzzy rank-based ensemble of CNN models for classification of cervical cytology
title_full_unstemmed A fuzzy rank-based ensemble of CNN models for classification of cervical cytology
title_short A fuzzy rank-based ensemble of CNN models for classification of cervical cytology
title_sort fuzzy rank-based ensemble of cnn models for classification of cervical cytology
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8282795/
https://www.ncbi.nlm.nih.gov/pubmed/34267261
http://dx.doi.org/10.1038/s41598-021-93783-8
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