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Automated Left Ventricle Ischemic Scar Detection in CT Using Deep Neural Networks

Objectives: The aim of this study is to develop a scar detection method for routine computed tomography angiography (CTA) imaging using deep convolutional neural networks (CNN), which relies solely on anatomical information as input and is compatible with existing clinical workflows. Background: Ide...

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Autores principales: O'Brien, Hugh, Whitaker, John, Singh Sidhu, Baldeep, Gould, Justin, Kurzendorfer, Tanja, O'Neill, Mark D., Rajani, Ronak, Grigoryan, Karine, Rinaldi, Christopher Aldo, Taylor, Jonathan, Rhode, Kawal, Mountney, Peter, Niederer, Steven
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8283258/
https://www.ncbi.nlm.nih.gov/pubmed/34277724
http://dx.doi.org/10.3389/fcvm.2021.655252
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author O'Brien, Hugh
Whitaker, John
Singh Sidhu, Baldeep
Gould, Justin
Kurzendorfer, Tanja
O'Neill, Mark D.
Rajani, Ronak
Grigoryan, Karine
Rinaldi, Christopher Aldo
Taylor, Jonathan
Rhode, Kawal
Mountney, Peter
Niederer, Steven
author_facet O'Brien, Hugh
Whitaker, John
Singh Sidhu, Baldeep
Gould, Justin
Kurzendorfer, Tanja
O'Neill, Mark D.
Rajani, Ronak
Grigoryan, Karine
Rinaldi, Christopher Aldo
Taylor, Jonathan
Rhode, Kawal
Mountney, Peter
Niederer, Steven
author_sort O'Brien, Hugh
collection PubMed
description Objectives: The aim of this study is to develop a scar detection method for routine computed tomography angiography (CTA) imaging using deep convolutional neural networks (CNN), which relies solely on anatomical information as input and is compatible with existing clinical workflows. Background: Identifying cardiac patients with scar tissue is important for assisting diagnosis and guiding interventions. Late gadolinium enhancement (LGE) magnetic resonance imaging (MRI) is the gold standard for scar imaging; however, there are common instances where it is contraindicated. CTA is an alternative imaging modality that has fewer contraindications and is faster than Cardiovascular magnetic resonance imaging but is unable to reliably image scar. Methods: A dataset of LGE MRI (200 patients, 83 with scar) was used to train and validate a CNN to detect ischemic scar slices using segmentation masks as input to the network. MRIs were segmented to produce 3D left ventricle meshes, which were sampled at points along the short axis to extract anatomical masks, with scar labels from LGE as ground truth. The trained CNN was tested with an independent CTA dataset (25 patients, with ground truth established with paired LGE MRI). Automated segmentation was performed to provide the same input format of anatomical masks for the network. The CNN was compared against manual reading of the CTA dataset by 3 experts. Results: Note that 84.7% cross-validated accuracy (AUC: 0.896) for detecting scar slices in the left ventricle on the MRI data was achieved. The trained network was tested against the CTA-derived data, with no further training, where it achieved an 88.3% accuracy (AUC: 0.901). The automated pipeline outperformed the manual reading by clinicians. Conclusion: Automatic ischemic scar detection can be performed from a routine cardiac CTA, without any scar-specific imaging or contrast agents. This requires only a single acquisition in the cardiac cycle. In a clinical setting, with near zero additional cost, scar presence could be detected to triage images, reduce reading times, and guide clinical decision-making.
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spelling pubmed-82832582021-07-17 Automated Left Ventricle Ischemic Scar Detection in CT Using Deep Neural Networks O'Brien, Hugh Whitaker, John Singh Sidhu, Baldeep Gould, Justin Kurzendorfer, Tanja O'Neill, Mark D. Rajani, Ronak Grigoryan, Karine Rinaldi, Christopher Aldo Taylor, Jonathan Rhode, Kawal Mountney, Peter Niederer, Steven Front Cardiovasc Med Cardiovascular Medicine Objectives: The aim of this study is to develop a scar detection method for routine computed tomography angiography (CTA) imaging using deep convolutional neural networks (CNN), which relies solely on anatomical information as input and is compatible with existing clinical workflows. Background: Identifying cardiac patients with scar tissue is important for assisting diagnosis and guiding interventions. Late gadolinium enhancement (LGE) magnetic resonance imaging (MRI) is the gold standard for scar imaging; however, there are common instances where it is contraindicated. CTA is an alternative imaging modality that has fewer contraindications and is faster than Cardiovascular magnetic resonance imaging but is unable to reliably image scar. Methods: A dataset of LGE MRI (200 patients, 83 with scar) was used to train and validate a CNN to detect ischemic scar slices using segmentation masks as input to the network. MRIs were segmented to produce 3D left ventricle meshes, which were sampled at points along the short axis to extract anatomical masks, with scar labels from LGE as ground truth. The trained CNN was tested with an independent CTA dataset (25 patients, with ground truth established with paired LGE MRI). Automated segmentation was performed to provide the same input format of anatomical masks for the network. The CNN was compared against manual reading of the CTA dataset by 3 experts. Results: Note that 84.7% cross-validated accuracy (AUC: 0.896) for detecting scar slices in the left ventricle on the MRI data was achieved. The trained network was tested against the CTA-derived data, with no further training, where it achieved an 88.3% accuracy (AUC: 0.901). The automated pipeline outperformed the manual reading by clinicians. Conclusion: Automatic ischemic scar detection can be performed from a routine cardiac CTA, without any scar-specific imaging or contrast agents. This requires only a single acquisition in the cardiac cycle. In a clinical setting, with near zero additional cost, scar presence could be detected to triage images, reduce reading times, and guide clinical decision-making. Frontiers Media S.A. 2021-07-02 /pmc/articles/PMC8283258/ /pubmed/34277724 http://dx.doi.org/10.3389/fcvm.2021.655252 Text en Copyright © 2021 O'Brien, Whitaker, Singh Sidhu, Gould, Kurzendorfer, O'Neill, Rajani, Grigoryan, Rinaldi, Taylor, Rhode, Mountney and Niederer. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cardiovascular Medicine
O'Brien, Hugh
Whitaker, John
Singh Sidhu, Baldeep
Gould, Justin
Kurzendorfer, Tanja
O'Neill, Mark D.
Rajani, Ronak
Grigoryan, Karine
Rinaldi, Christopher Aldo
Taylor, Jonathan
Rhode, Kawal
Mountney, Peter
Niederer, Steven
Automated Left Ventricle Ischemic Scar Detection in CT Using Deep Neural Networks
title Automated Left Ventricle Ischemic Scar Detection in CT Using Deep Neural Networks
title_full Automated Left Ventricle Ischemic Scar Detection in CT Using Deep Neural Networks
title_fullStr Automated Left Ventricle Ischemic Scar Detection in CT Using Deep Neural Networks
title_full_unstemmed Automated Left Ventricle Ischemic Scar Detection in CT Using Deep Neural Networks
title_short Automated Left Ventricle Ischemic Scar Detection in CT Using Deep Neural Networks
title_sort automated left ventricle ischemic scar detection in ct using deep neural networks
topic Cardiovascular Medicine
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8283258/
https://www.ncbi.nlm.nih.gov/pubmed/34277724
http://dx.doi.org/10.3389/fcvm.2021.655252
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