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Decomposition of Microbial Necromass Is Divergent at the Individual Taxonomic Level in Soil

The turnover of microbial biomass plays an important part in providing a significant source of carbon (C) to soil organic C. However, whether the decomposition of microbial necromass (non-living microbial biomass) in the soil varies at the individual taxa level remains largely unknown. To fill up th...

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Autores principales: Dong, Weiling, Song, Alin, Yin, Huaqun, Liu, Xueduan, Li, Jianwei, Fan, Fenliang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8283313/
https://www.ncbi.nlm.nih.gov/pubmed/34276613
http://dx.doi.org/10.3389/fmicb.2021.679793
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author Dong, Weiling
Song, Alin
Yin, Huaqun
Liu, Xueduan
Li, Jianwei
Fan, Fenliang
author_facet Dong, Weiling
Song, Alin
Yin, Huaqun
Liu, Xueduan
Li, Jianwei
Fan, Fenliang
author_sort Dong, Weiling
collection PubMed
description The turnover of microbial biomass plays an important part in providing a significant source of carbon (C) to soil organic C. However, whether the decomposition of microbial necromass (non-living microbial biomass) in the soil varies at the individual taxa level remains largely unknown. To fill up these gaps, we compared the necromass decomposition of bacterial and archaeal taxa by separating live microbial biomass with (18)O-stable isotope probing from dead microbial biomass in soil. Our results showed that most of the microbial necromass at the operational taxonomic unit level (88.51%), which mainly belong to Acidobacteria, Actinobacteria, Gemmatimonadetes, and Proteobacteria, decomposed significantly after 30 days. In addition, there were great variations in necromass decomposition within each phylum, such as the decomposition of operational taxonomic units in Proteobacteria that ranged from 51% (Beijerinckia) to 92% (Nitrosospira). More importantly, the necromass decomposition was not related to the chemical composition of the cell wall but might positively correlate with the guanine–cytosine content of DNA and negatively correlated with genome size. This study provided a new insight that the decomposition of microbial necromass in soil was divergent at the individual taxonomic level and could not be fully explained by previously proposed mechanisms.
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spelling pubmed-82833132021-07-17 Decomposition of Microbial Necromass Is Divergent at the Individual Taxonomic Level in Soil Dong, Weiling Song, Alin Yin, Huaqun Liu, Xueduan Li, Jianwei Fan, Fenliang Front Microbiol Microbiology The turnover of microbial biomass plays an important part in providing a significant source of carbon (C) to soil organic C. However, whether the decomposition of microbial necromass (non-living microbial biomass) in the soil varies at the individual taxa level remains largely unknown. To fill up these gaps, we compared the necromass decomposition of bacterial and archaeal taxa by separating live microbial biomass with (18)O-stable isotope probing from dead microbial biomass in soil. Our results showed that most of the microbial necromass at the operational taxonomic unit level (88.51%), which mainly belong to Acidobacteria, Actinobacteria, Gemmatimonadetes, and Proteobacteria, decomposed significantly after 30 days. In addition, there were great variations in necromass decomposition within each phylum, such as the decomposition of operational taxonomic units in Proteobacteria that ranged from 51% (Beijerinckia) to 92% (Nitrosospira). More importantly, the necromass decomposition was not related to the chemical composition of the cell wall but might positively correlate with the guanine–cytosine content of DNA and negatively correlated with genome size. This study provided a new insight that the decomposition of microbial necromass in soil was divergent at the individual taxonomic level and could not be fully explained by previously proposed mechanisms. Frontiers Media S.A. 2021-07-02 /pmc/articles/PMC8283313/ /pubmed/34276613 http://dx.doi.org/10.3389/fmicb.2021.679793 Text en Copyright © 2021 Dong, Song, Yin, Liu, Li and Fan. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Dong, Weiling
Song, Alin
Yin, Huaqun
Liu, Xueduan
Li, Jianwei
Fan, Fenliang
Decomposition of Microbial Necromass Is Divergent at the Individual Taxonomic Level in Soil
title Decomposition of Microbial Necromass Is Divergent at the Individual Taxonomic Level in Soil
title_full Decomposition of Microbial Necromass Is Divergent at the Individual Taxonomic Level in Soil
title_fullStr Decomposition of Microbial Necromass Is Divergent at the Individual Taxonomic Level in Soil
title_full_unstemmed Decomposition of Microbial Necromass Is Divergent at the Individual Taxonomic Level in Soil
title_short Decomposition of Microbial Necromass Is Divergent at the Individual Taxonomic Level in Soil
title_sort decomposition of microbial necromass is divergent at the individual taxonomic level in soil
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8283313/
https://www.ncbi.nlm.nih.gov/pubmed/34276613
http://dx.doi.org/10.3389/fmicb.2021.679793
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