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MitoTox: a comprehensive mitochondrial toxicity database
BACKGROUND: Mitochondria play essential roles in regulating cellular functions. Some drug treatments and molecular interventions have been reported to have off-target effects damaging mitochondria and causing severe side effects. The development of a database for the management of mitochondrial toxi...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8283953/ https://www.ncbi.nlm.nih.gov/pubmed/34266386 http://dx.doi.org/10.1186/s12859-021-04285-3 |
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author | Lin, Yu-Te Lin, Ko-Hong Huang, Chi-Jung Wei, An-Chi |
author_facet | Lin, Yu-Te Lin, Ko-Hong Huang, Chi-Jung Wei, An-Chi |
author_sort | Lin, Yu-Te |
collection | PubMed |
description | BACKGROUND: Mitochondria play essential roles in regulating cellular functions. Some drug treatments and molecular interventions have been reported to have off-target effects damaging mitochondria and causing severe side effects. The development of a database for the management of mitochondrial toxicity-related molecules and their targets is important for further analyses. RESULTS: To correlate chemical, biological and mechanistic information on clinically relevant mitochondria-related toxicity, a comprehensive mitochondrial toxicity database (MitoTox) was developed. MitoTox is an electronic repository that integrates comprehensive information about mitochondria-related toxins and their targets. Information and data related to mitochondrial toxicity originate from various sources, including scientific journals and other electronic databases. These resources were manually verified and extracted into MitoTox. The database currently contains over 1400 small-molecule compounds, 870 mitochondrial targets, and more than 4100 mitochondrial toxin-target associations. Each MitoTox data record contains over 30 fields, including biochemical properties, therapeutic classification, target proteins, toxicological data, mechanistic information, clinical side effects, and references. CONCLUSIONS: MitoTox provides a fully searchable database with links to references and other databases. Potential applications of MitoTox include toxicity classification, prediction, reference and education. MitoTox is available online at http://www.mitotox.org. |
format | Online Article Text |
id | pubmed-8283953 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-82839532021-07-19 MitoTox: a comprehensive mitochondrial toxicity database Lin, Yu-Te Lin, Ko-Hong Huang, Chi-Jung Wei, An-Chi BMC Bioinformatics Research BACKGROUND: Mitochondria play essential roles in regulating cellular functions. Some drug treatments and molecular interventions have been reported to have off-target effects damaging mitochondria and causing severe side effects. The development of a database for the management of mitochondrial toxicity-related molecules and their targets is important for further analyses. RESULTS: To correlate chemical, biological and mechanistic information on clinically relevant mitochondria-related toxicity, a comprehensive mitochondrial toxicity database (MitoTox) was developed. MitoTox is an electronic repository that integrates comprehensive information about mitochondria-related toxins and their targets. Information and data related to mitochondrial toxicity originate from various sources, including scientific journals and other electronic databases. These resources were manually verified and extracted into MitoTox. The database currently contains over 1400 small-molecule compounds, 870 mitochondrial targets, and more than 4100 mitochondrial toxin-target associations. Each MitoTox data record contains over 30 fields, including biochemical properties, therapeutic classification, target proteins, toxicological data, mechanistic information, clinical side effects, and references. CONCLUSIONS: MitoTox provides a fully searchable database with links to references and other databases. Potential applications of MitoTox include toxicity classification, prediction, reference and education. MitoTox is available online at http://www.mitotox.org. BioMed Central 2021-07-15 /pmc/articles/PMC8283953/ /pubmed/34266386 http://dx.doi.org/10.1186/s12859-021-04285-3 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Lin, Yu-Te Lin, Ko-Hong Huang, Chi-Jung Wei, An-Chi MitoTox: a comprehensive mitochondrial toxicity database |
title | MitoTox: a comprehensive mitochondrial toxicity database |
title_full | MitoTox: a comprehensive mitochondrial toxicity database |
title_fullStr | MitoTox: a comprehensive mitochondrial toxicity database |
title_full_unstemmed | MitoTox: a comprehensive mitochondrial toxicity database |
title_short | MitoTox: a comprehensive mitochondrial toxicity database |
title_sort | mitotox: a comprehensive mitochondrial toxicity database |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8283953/ https://www.ncbi.nlm.nih.gov/pubmed/34266386 http://dx.doi.org/10.1186/s12859-021-04285-3 |
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