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Complete mitochondrial genome of Coscinodiscus granii (Coscinodiscophyceae, Bacillariophyta)
Coscinodiscus is a genus common in marine phytoplankton, with some species thought to have a significant negative ecological impact. However, the availability of their genome sequences is rather limited. Here, we assembled and annotated the first complete mitochondrial genome (mtDNA) of the species...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8284155/ https://www.ncbi.nlm.nih.gov/pubmed/34345688 http://dx.doi.org/10.1080/23802359.2021.1951135 |
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author | Huang, Hailong Song, Huiyin Zhao, Zengxia Liu, Feng Chen, Nansheng |
author_facet | Huang, Hailong Song, Huiyin Zhao, Zengxia Liu, Feng Chen, Nansheng |
author_sort | Huang, Hailong |
collection | PubMed |
description | Coscinodiscus is a genus common in marine phytoplankton, with some species thought to have a significant negative ecological impact. However, the availability of their genome sequences is rather limited. Here, we assembled and annotated the first complete mitochondrial genome (mtDNA) of the species Coscinodiscus granii L.F.Gough 1905, as part of our efforts to gain a better understanding of the genetic characteristics of Coscinodiscus taxa at a genomic level. The circular mtDNA was 34,970 bp in length and encoded 60 genes, including 32 protein-coding genes (PCGs), 24 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and two conserved open reading frames (orfs). The overall GC content of C. granii mtDNA was 24.30%, which was slightly lower than that of C. wailesii (25.00%), the first species in the genus Coscinodiscus whose mtDNA has been reported, and higher than that of Melosira undulata (21.60%), the first species in the class Coscinodiscophyceae whose mtDNA has been reported. As expected for congeneric species, phylogenetic analysis using concatenated amino acid sequences of 27 shared PCGs suggested that C. granii has a closer evolutionary relationship with C. wailesii. Coscinodiscus was found to be monophyletic in the phylogeny. The complete mtDNAs of more Coscinodiscus species will facilitate the exploration of the evolutionary relationships of species in the Class Coscinodiscophyceae. |
format | Online Article Text |
id | pubmed-8284155 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-82841552021-08-02 Complete mitochondrial genome of Coscinodiscus granii (Coscinodiscophyceae, Bacillariophyta) Huang, Hailong Song, Huiyin Zhao, Zengxia Liu, Feng Chen, Nansheng Mitochondrial DNA B Resour Mitogenome Announcement Coscinodiscus is a genus common in marine phytoplankton, with some species thought to have a significant negative ecological impact. However, the availability of their genome sequences is rather limited. Here, we assembled and annotated the first complete mitochondrial genome (mtDNA) of the species Coscinodiscus granii L.F.Gough 1905, as part of our efforts to gain a better understanding of the genetic characteristics of Coscinodiscus taxa at a genomic level. The circular mtDNA was 34,970 bp in length and encoded 60 genes, including 32 protein-coding genes (PCGs), 24 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and two conserved open reading frames (orfs). The overall GC content of C. granii mtDNA was 24.30%, which was slightly lower than that of C. wailesii (25.00%), the first species in the genus Coscinodiscus whose mtDNA has been reported, and higher than that of Melosira undulata (21.60%), the first species in the class Coscinodiscophyceae whose mtDNA has been reported. As expected for congeneric species, phylogenetic analysis using concatenated amino acid sequences of 27 shared PCGs suggested that C. granii has a closer evolutionary relationship with C. wailesii. Coscinodiscus was found to be monophyletic in the phylogeny. The complete mtDNAs of more Coscinodiscus species will facilitate the exploration of the evolutionary relationships of species in the Class Coscinodiscophyceae. Taylor & Francis 2021-07-15 /pmc/articles/PMC8284155/ /pubmed/34345688 http://dx.doi.org/10.1080/23802359.2021.1951135 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Huang, Hailong Song, Huiyin Zhao, Zengxia Liu, Feng Chen, Nansheng Complete mitochondrial genome of Coscinodiscus granii (Coscinodiscophyceae, Bacillariophyta) |
title | Complete mitochondrial genome of Coscinodiscus granii (Coscinodiscophyceae, Bacillariophyta) |
title_full | Complete mitochondrial genome of Coscinodiscus granii (Coscinodiscophyceae, Bacillariophyta) |
title_fullStr | Complete mitochondrial genome of Coscinodiscus granii (Coscinodiscophyceae, Bacillariophyta) |
title_full_unstemmed | Complete mitochondrial genome of Coscinodiscus granii (Coscinodiscophyceae, Bacillariophyta) |
title_short | Complete mitochondrial genome of Coscinodiscus granii (Coscinodiscophyceae, Bacillariophyta) |
title_sort | complete mitochondrial genome of coscinodiscus granii (coscinodiscophyceae, bacillariophyta) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8284155/ https://www.ncbi.nlm.nih.gov/pubmed/34345688 http://dx.doi.org/10.1080/23802359.2021.1951135 |
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