Cargando…

Complete mitochondrial genome of Coscinodiscus granii (Coscinodiscophyceae, Bacillariophyta)

Coscinodiscus is a genus common in marine phytoplankton, with some species thought to have a significant negative ecological impact. However, the availability of their genome sequences is rather limited. Here, we assembled and annotated the first complete mitochondrial genome (mtDNA) of the species...

Descripción completa

Detalles Bibliográficos
Autores principales: Huang, Hailong, Song, Huiyin, Zhao, Zengxia, Liu, Feng, Chen, Nansheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8284155/
https://www.ncbi.nlm.nih.gov/pubmed/34345688
http://dx.doi.org/10.1080/23802359.2021.1951135
_version_ 1783723341120536576
author Huang, Hailong
Song, Huiyin
Zhao, Zengxia
Liu, Feng
Chen, Nansheng
author_facet Huang, Hailong
Song, Huiyin
Zhao, Zengxia
Liu, Feng
Chen, Nansheng
author_sort Huang, Hailong
collection PubMed
description Coscinodiscus is a genus common in marine phytoplankton, with some species thought to have a significant negative ecological impact. However, the availability of their genome sequences is rather limited. Here, we assembled and annotated the first complete mitochondrial genome (mtDNA) of the species Coscinodiscus granii L.F.Gough 1905, as part of our efforts to gain a better understanding of the genetic characteristics of Coscinodiscus taxa at a genomic level. The circular mtDNA was 34,970 bp in length and encoded 60 genes, including 32 protein-coding genes (PCGs), 24 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and two conserved open reading frames (orfs). The overall GC content of C. granii mtDNA was 24.30%, which was slightly lower than that of C. wailesii (25.00%), the first species in the genus Coscinodiscus whose mtDNA has been reported, and higher than that of Melosira undulata (21.60%), the first species in the class Coscinodiscophyceae whose mtDNA has been reported. As expected for congeneric species, phylogenetic analysis using concatenated amino acid sequences of 27 shared PCGs suggested that C. granii has a closer evolutionary relationship with C. wailesii. Coscinodiscus was found to be monophyletic in the phylogeny. The complete mtDNAs of more Coscinodiscus species will facilitate the exploration of the evolutionary relationships of species in the Class Coscinodiscophyceae.
format Online
Article
Text
id pubmed-8284155
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-82841552021-08-02 Complete mitochondrial genome of Coscinodiscus granii (Coscinodiscophyceae, Bacillariophyta) Huang, Hailong Song, Huiyin Zhao, Zengxia Liu, Feng Chen, Nansheng Mitochondrial DNA B Resour Mitogenome Announcement Coscinodiscus is a genus common in marine phytoplankton, with some species thought to have a significant negative ecological impact. However, the availability of their genome sequences is rather limited. Here, we assembled and annotated the first complete mitochondrial genome (mtDNA) of the species Coscinodiscus granii L.F.Gough 1905, as part of our efforts to gain a better understanding of the genetic characteristics of Coscinodiscus taxa at a genomic level. The circular mtDNA was 34,970 bp in length and encoded 60 genes, including 32 protein-coding genes (PCGs), 24 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and two conserved open reading frames (orfs). The overall GC content of C. granii mtDNA was 24.30%, which was slightly lower than that of C. wailesii (25.00%), the first species in the genus Coscinodiscus whose mtDNA has been reported, and higher than that of Melosira undulata (21.60%), the first species in the class Coscinodiscophyceae whose mtDNA has been reported. As expected for congeneric species, phylogenetic analysis using concatenated amino acid sequences of 27 shared PCGs suggested that C. granii has a closer evolutionary relationship with C. wailesii. Coscinodiscus was found to be monophyletic in the phylogeny. The complete mtDNAs of more Coscinodiscus species will facilitate the exploration of the evolutionary relationships of species in the Class Coscinodiscophyceae. Taylor & Francis 2021-07-15 /pmc/articles/PMC8284155/ /pubmed/34345688 http://dx.doi.org/10.1080/23802359.2021.1951135 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Huang, Hailong
Song, Huiyin
Zhao, Zengxia
Liu, Feng
Chen, Nansheng
Complete mitochondrial genome of Coscinodiscus granii (Coscinodiscophyceae, Bacillariophyta)
title Complete mitochondrial genome of Coscinodiscus granii (Coscinodiscophyceae, Bacillariophyta)
title_full Complete mitochondrial genome of Coscinodiscus granii (Coscinodiscophyceae, Bacillariophyta)
title_fullStr Complete mitochondrial genome of Coscinodiscus granii (Coscinodiscophyceae, Bacillariophyta)
title_full_unstemmed Complete mitochondrial genome of Coscinodiscus granii (Coscinodiscophyceae, Bacillariophyta)
title_short Complete mitochondrial genome of Coscinodiscus granii (Coscinodiscophyceae, Bacillariophyta)
title_sort complete mitochondrial genome of coscinodiscus granii (coscinodiscophyceae, bacillariophyta)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8284155/
https://www.ncbi.nlm.nih.gov/pubmed/34345688
http://dx.doi.org/10.1080/23802359.2021.1951135
work_keys_str_mv AT huanghailong completemitochondrialgenomeofcoscinodiscusgraniicoscinodiscophyceaebacillariophyta
AT songhuiyin completemitochondrialgenomeofcoscinodiscusgraniicoscinodiscophyceaebacillariophyta
AT zhaozengxia completemitochondrialgenomeofcoscinodiscusgraniicoscinodiscophyceaebacillariophyta
AT liufeng completemitochondrialgenomeofcoscinodiscusgraniicoscinodiscophyceaebacillariophyta
AT chennansheng completemitochondrialgenomeofcoscinodiscusgraniicoscinodiscophyceaebacillariophyta