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Parity and time reversal elucidate both decision-making in empirical models and attractor scaling in critical Boolean networks

We present new applications of parity inversion and time reversal to the emergence of complex behavior from simple dynamical rules in stochastic discrete models. Our parity-based encoding of causal relationships and time-reversal construction efficiently reveal discrete analogs of stable and unstabl...

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Autores principales: Rozum, Jordan C., Gómez Tejeda Zañudo, Jorge, Gan, Xiao, Deritei, Dávid, Albert, Réka
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Association for the Advancement of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8284893/
https://www.ncbi.nlm.nih.gov/pubmed/34272246
http://dx.doi.org/10.1126/sciadv.abf8124
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author Rozum, Jordan C.
Gómez Tejeda Zañudo, Jorge
Gan, Xiao
Deritei, Dávid
Albert, Réka
author_facet Rozum, Jordan C.
Gómez Tejeda Zañudo, Jorge
Gan, Xiao
Deritei, Dávid
Albert, Réka
author_sort Rozum, Jordan C.
collection PubMed
description We present new applications of parity inversion and time reversal to the emergence of complex behavior from simple dynamical rules in stochastic discrete models. Our parity-based encoding of causal relationships and time-reversal construction efficiently reveal discrete analogs of stable and unstable manifolds. We demonstrate their predictive power by studying decision-making in systems biology and statistical physics models. These applications underpin a novel attractor identification algorithm implemented for Boolean networks under stochastic dynamics. Its speed enables resolving a long-standing open question of how attractor count in critical random Boolean networks scales with network size and whether the scaling matches biological observations. Via 80-fold improvement in probed network size (N = 16,384), we find the unexpectedly low scaling exponent of 0.12 ± 0.05, approximately one-tenth the analytical upper bound. We demonstrate a general principle: A system’s relationship to its time reversal and state-space inversion constrains its repertoire of emergent behaviors.
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spelling pubmed-82848932021-08-02 Parity and time reversal elucidate both decision-making in empirical models and attractor scaling in critical Boolean networks Rozum, Jordan C. Gómez Tejeda Zañudo, Jorge Gan, Xiao Deritei, Dávid Albert, Réka Sci Adv Research Articles We present new applications of parity inversion and time reversal to the emergence of complex behavior from simple dynamical rules in stochastic discrete models. Our parity-based encoding of causal relationships and time-reversal construction efficiently reveal discrete analogs of stable and unstable manifolds. We demonstrate their predictive power by studying decision-making in systems biology and statistical physics models. These applications underpin a novel attractor identification algorithm implemented for Boolean networks under stochastic dynamics. Its speed enables resolving a long-standing open question of how attractor count in critical random Boolean networks scales with network size and whether the scaling matches biological observations. Via 80-fold improvement in probed network size (N = 16,384), we find the unexpectedly low scaling exponent of 0.12 ± 0.05, approximately one-tenth the analytical upper bound. We demonstrate a general principle: A system’s relationship to its time reversal and state-space inversion constrains its repertoire of emergent behaviors. American Association for the Advancement of Science 2021-07-16 /pmc/articles/PMC8284893/ /pubmed/34272246 http://dx.doi.org/10.1126/sciadv.abf8124 Text en Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution License 4.0 (CC BY). https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution license (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Rozum, Jordan C.
Gómez Tejeda Zañudo, Jorge
Gan, Xiao
Deritei, Dávid
Albert, Réka
Parity and time reversal elucidate both decision-making in empirical models and attractor scaling in critical Boolean networks
title Parity and time reversal elucidate both decision-making in empirical models and attractor scaling in critical Boolean networks
title_full Parity and time reversal elucidate both decision-making in empirical models and attractor scaling in critical Boolean networks
title_fullStr Parity and time reversal elucidate both decision-making in empirical models and attractor scaling in critical Boolean networks
title_full_unstemmed Parity and time reversal elucidate both decision-making in empirical models and attractor scaling in critical Boolean networks
title_short Parity and time reversal elucidate both decision-making in empirical models and attractor scaling in critical Boolean networks
title_sort parity and time reversal elucidate both decision-making in empirical models and attractor scaling in critical boolean networks
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8284893/
https://www.ncbi.nlm.nih.gov/pubmed/34272246
http://dx.doi.org/10.1126/sciadv.abf8124
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