Cargando…

A DICOM dataset for evaluation of medical image de-identification

We developed a DICOM dataset that can be used to evaluate the performance of de-identification algorithms. DICOM objects (a total of 1,693 CT, MRI, PET, and digital X-ray images) were selected from datasets published in the Cancer Imaging Archive (TCIA). Synthetic Protected Health Information (PHI)...

Descripción completa

Detalles Bibliográficos
Autores principales: Rutherford, Michael, Mun, Seong K., Levine, Betty, Bennett, William, Smith, Kirk, Farmer, Phil, Jarosz, Quasar, Wagner, Ulrike, Freyman, John, Blake, Geri, Tarbox, Lawrence, Farahani, Keyvan, Prior, Fred
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8285420/
https://www.ncbi.nlm.nih.gov/pubmed/34272388
http://dx.doi.org/10.1038/s41597-021-00967-y
_version_ 1783723558755631104
author Rutherford, Michael
Mun, Seong K.
Levine, Betty
Bennett, William
Smith, Kirk
Farmer, Phil
Jarosz, Quasar
Wagner, Ulrike
Freyman, John
Blake, Geri
Tarbox, Lawrence
Farahani, Keyvan
Prior, Fred
author_facet Rutherford, Michael
Mun, Seong K.
Levine, Betty
Bennett, William
Smith, Kirk
Farmer, Phil
Jarosz, Quasar
Wagner, Ulrike
Freyman, John
Blake, Geri
Tarbox, Lawrence
Farahani, Keyvan
Prior, Fred
author_sort Rutherford, Michael
collection PubMed
description We developed a DICOM dataset that can be used to evaluate the performance of de-identification algorithms. DICOM objects (a total of 1,693 CT, MRI, PET, and digital X-ray images) were selected from datasets published in the Cancer Imaging Archive (TCIA). Synthetic Protected Health Information (PHI) was generated and inserted into selected DICOM Attributes to mimic typical clinical imaging exams. The DICOM Standard and TCIA curation audit logs guided the insertion of synthetic PHI into standard and non-standard DICOM data elements. A TCIA curation team tested the utility of the evaluation dataset. With this publication, the evaluation dataset (containing synthetic PHI) and de-identified evaluation dataset (the result of TCIA curation) are released on TCIA in advance of a competition, sponsored by the National Cancer Institute (NCI), for algorithmic de-identification of medical image datasets. The competition will use a much larger evaluation dataset constructed in the same manner. This paper describes the creation of the evaluation datasets and guidelines for their use.
format Online
Article
Text
id pubmed-8285420
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-82854202021-07-23 A DICOM dataset for evaluation of medical image de-identification Rutherford, Michael Mun, Seong K. Levine, Betty Bennett, William Smith, Kirk Farmer, Phil Jarosz, Quasar Wagner, Ulrike Freyman, John Blake, Geri Tarbox, Lawrence Farahani, Keyvan Prior, Fred Sci Data Data Descriptor We developed a DICOM dataset that can be used to evaluate the performance of de-identification algorithms. DICOM objects (a total of 1,693 CT, MRI, PET, and digital X-ray images) were selected from datasets published in the Cancer Imaging Archive (TCIA). Synthetic Protected Health Information (PHI) was generated and inserted into selected DICOM Attributes to mimic typical clinical imaging exams. The DICOM Standard and TCIA curation audit logs guided the insertion of synthetic PHI into standard and non-standard DICOM data elements. A TCIA curation team tested the utility of the evaluation dataset. With this publication, the evaluation dataset (containing synthetic PHI) and de-identified evaluation dataset (the result of TCIA curation) are released on TCIA in advance of a competition, sponsored by the National Cancer Institute (NCI), for algorithmic de-identification of medical image datasets. The competition will use a much larger evaluation dataset constructed in the same manner. This paper describes the creation of the evaluation datasets and guidelines for their use. Nature Publishing Group UK 2021-07-16 /pmc/articles/PMC8285420/ /pubmed/34272388 http://dx.doi.org/10.1038/s41597-021-00967-y Text en © This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) applies to the metadata files associated with this article.
spellingShingle Data Descriptor
Rutherford, Michael
Mun, Seong K.
Levine, Betty
Bennett, William
Smith, Kirk
Farmer, Phil
Jarosz, Quasar
Wagner, Ulrike
Freyman, John
Blake, Geri
Tarbox, Lawrence
Farahani, Keyvan
Prior, Fred
A DICOM dataset for evaluation of medical image de-identification
title A DICOM dataset for evaluation of medical image de-identification
title_full A DICOM dataset for evaluation of medical image de-identification
title_fullStr A DICOM dataset for evaluation of medical image de-identification
title_full_unstemmed A DICOM dataset for evaluation of medical image de-identification
title_short A DICOM dataset for evaluation of medical image de-identification
title_sort dicom dataset for evaluation of medical image de-identification
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8285420/
https://www.ncbi.nlm.nih.gov/pubmed/34272388
http://dx.doi.org/10.1038/s41597-021-00967-y
work_keys_str_mv AT rutherfordmichael adicomdatasetforevaluationofmedicalimagedeidentification
AT munseongk adicomdatasetforevaluationofmedicalimagedeidentification
AT levinebetty adicomdatasetforevaluationofmedicalimagedeidentification
AT bennettwilliam adicomdatasetforevaluationofmedicalimagedeidentification
AT smithkirk adicomdatasetforevaluationofmedicalimagedeidentification
AT farmerphil adicomdatasetforevaluationofmedicalimagedeidentification
AT jaroszquasar adicomdatasetforevaluationofmedicalimagedeidentification
AT wagnerulrike adicomdatasetforevaluationofmedicalimagedeidentification
AT freymanjohn adicomdatasetforevaluationofmedicalimagedeidentification
AT blakegeri adicomdatasetforevaluationofmedicalimagedeidentification
AT tarboxlawrence adicomdatasetforevaluationofmedicalimagedeidentification
AT farahanikeyvan adicomdatasetforevaluationofmedicalimagedeidentification
AT priorfred adicomdatasetforevaluationofmedicalimagedeidentification
AT rutherfordmichael dicomdatasetforevaluationofmedicalimagedeidentification
AT munseongk dicomdatasetforevaluationofmedicalimagedeidentification
AT levinebetty dicomdatasetforevaluationofmedicalimagedeidentification
AT bennettwilliam dicomdatasetforevaluationofmedicalimagedeidentification
AT smithkirk dicomdatasetforevaluationofmedicalimagedeidentification
AT farmerphil dicomdatasetforevaluationofmedicalimagedeidentification
AT jaroszquasar dicomdatasetforevaluationofmedicalimagedeidentification
AT wagnerulrike dicomdatasetforevaluationofmedicalimagedeidentification
AT freymanjohn dicomdatasetforevaluationofmedicalimagedeidentification
AT blakegeri dicomdatasetforevaluationofmedicalimagedeidentification
AT tarboxlawrence dicomdatasetforevaluationofmedicalimagedeidentification
AT farahanikeyvan dicomdatasetforevaluationofmedicalimagedeidentification
AT priorfred dicomdatasetforevaluationofmedicalimagedeidentification