Cargando…
Multi-view convolutional neural networks for automated ocular structure and tumor segmentation in retinoblastoma
In retinoblastoma, accurate segmentation of ocular structure and tumor tissue is important when working towards personalized treatment. This retrospective study serves to evaluate the performance of multi-view convolutional neural networks (MV-CNNs) for automated eye and tumor segmentation on MRI in...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8285489/ https://www.ncbi.nlm.nih.gov/pubmed/34272413 http://dx.doi.org/10.1038/s41598-021-93905-2 |
_version_ | 1783723568656285696 |
---|---|
author | Strijbis, Victor I. J. de Bloeme, Christiaan M. Jansen, Robin W. Kebiri, Hamza Nguyen, Huu-Giao de Jong, Marcus C. Moll, Annette C. Bach-Cuadra, Merixtell de Graaf, Pim Steenwijk, Martijn D. |
author_facet | Strijbis, Victor I. J. de Bloeme, Christiaan M. Jansen, Robin W. Kebiri, Hamza Nguyen, Huu-Giao de Jong, Marcus C. Moll, Annette C. Bach-Cuadra, Merixtell de Graaf, Pim Steenwijk, Martijn D. |
author_sort | Strijbis, Victor I. J. |
collection | PubMed |
description | In retinoblastoma, accurate segmentation of ocular structure and tumor tissue is important when working towards personalized treatment. This retrospective study serves to evaluate the performance of multi-view convolutional neural networks (MV-CNNs) for automated eye and tumor segmentation on MRI in retinoblastoma patients. Forty retinoblastoma and 20 healthy-eyes from 30 patients were included in a train/test (N = 29 retinoblastoma-, 17 healthy-eyes) and independent validation (N = 11 retinoblastoma-, 3 healthy-eyes) set. Imaging was done using 3.0 T Fast Imaging Employing Steady-state Acquisition (FIESTA), T2-weighted and contrast-enhanced T1-weighted sequences. Sclera, vitreous humour, lens, retinal detachment and tumor were manually delineated on FIESTA images to serve as a reference standard. Volumetric and spatial performance were assessed by calculating intra-class correlation (ICC) and dice similarity coefficient (DSC). Additionally, the effects of multi-scale, sequences and data augmentation were explored. Optimal performance was obtained by using a three-level pyramid MV-CNN with FIESTA, T2 and T1c sequences and data augmentation. Eye and tumor volumetric ICC were 0.997 and 0.996, respectively. Median [Interquartile range] DSC for eye, sclera, vitreous, lens, retinal detachment and tumor were 0.965 [0.950–0.975], 0.847 [0.782–0.893], 0.975 [0.930–0.986], 0.909 [0.847–0.951], 0.828 [0.458–0.962] and 0.914 [0.852–0.958], respectively. MV-CNN can be used to obtain accurate ocular structure and tumor segmentations in retinoblastoma. |
format | Online Article Text |
id | pubmed-8285489 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-82854892021-07-19 Multi-view convolutional neural networks for automated ocular structure and tumor segmentation in retinoblastoma Strijbis, Victor I. J. de Bloeme, Christiaan M. Jansen, Robin W. Kebiri, Hamza Nguyen, Huu-Giao de Jong, Marcus C. Moll, Annette C. Bach-Cuadra, Merixtell de Graaf, Pim Steenwijk, Martijn D. Sci Rep Article In retinoblastoma, accurate segmentation of ocular structure and tumor tissue is important when working towards personalized treatment. This retrospective study serves to evaluate the performance of multi-view convolutional neural networks (MV-CNNs) for automated eye and tumor segmentation on MRI in retinoblastoma patients. Forty retinoblastoma and 20 healthy-eyes from 30 patients were included in a train/test (N = 29 retinoblastoma-, 17 healthy-eyes) and independent validation (N = 11 retinoblastoma-, 3 healthy-eyes) set. Imaging was done using 3.0 T Fast Imaging Employing Steady-state Acquisition (FIESTA), T2-weighted and contrast-enhanced T1-weighted sequences. Sclera, vitreous humour, lens, retinal detachment and tumor were manually delineated on FIESTA images to serve as a reference standard. Volumetric and spatial performance were assessed by calculating intra-class correlation (ICC) and dice similarity coefficient (DSC). Additionally, the effects of multi-scale, sequences and data augmentation were explored. Optimal performance was obtained by using a three-level pyramid MV-CNN with FIESTA, T2 and T1c sequences and data augmentation. Eye and tumor volumetric ICC were 0.997 and 0.996, respectively. Median [Interquartile range] DSC for eye, sclera, vitreous, lens, retinal detachment and tumor were 0.965 [0.950–0.975], 0.847 [0.782–0.893], 0.975 [0.930–0.986], 0.909 [0.847–0.951], 0.828 [0.458–0.962] and 0.914 [0.852–0.958], respectively. MV-CNN can be used to obtain accurate ocular structure and tumor segmentations in retinoblastoma. Nature Publishing Group UK 2021-07-16 /pmc/articles/PMC8285489/ /pubmed/34272413 http://dx.doi.org/10.1038/s41598-021-93905-2 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Strijbis, Victor I. J. de Bloeme, Christiaan M. Jansen, Robin W. Kebiri, Hamza Nguyen, Huu-Giao de Jong, Marcus C. Moll, Annette C. Bach-Cuadra, Merixtell de Graaf, Pim Steenwijk, Martijn D. Multi-view convolutional neural networks for automated ocular structure and tumor segmentation in retinoblastoma |
title | Multi-view convolutional neural networks for automated ocular structure and tumor segmentation in retinoblastoma |
title_full | Multi-view convolutional neural networks for automated ocular structure and tumor segmentation in retinoblastoma |
title_fullStr | Multi-view convolutional neural networks for automated ocular structure and tumor segmentation in retinoblastoma |
title_full_unstemmed | Multi-view convolutional neural networks for automated ocular structure and tumor segmentation in retinoblastoma |
title_short | Multi-view convolutional neural networks for automated ocular structure and tumor segmentation in retinoblastoma |
title_sort | multi-view convolutional neural networks for automated ocular structure and tumor segmentation in retinoblastoma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8285489/ https://www.ncbi.nlm.nih.gov/pubmed/34272413 http://dx.doi.org/10.1038/s41598-021-93905-2 |
work_keys_str_mv | AT strijbisvictorij multiviewconvolutionalneuralnetworksforautomatedocularstructureandtumorsegmentationinretinoblastoma AT debloemechristiaanm multiviewconvolutionalneuralnetworksforautomatedocularstructureandtumorsegmentationinretinoblastoma AT jansenrobinw multiviewconvolutionalneuralnetworksforautomatedocularstructureandtumorsegmentationinretinoblastoma AT kebirihamza multiviewconvolutionalneuralnetworksforautomatedocularstructureandtumorsegmentationinretinoblastoma AT nguyenhuugiao multiviewconvolutionalneuralnetworksforautomatedocularstructureandtumorsegmentationinretinoblastoma AT dejongmarcusc multiviewconvolutionalneuralnetworksforautomatedocularstructureandtumorsegmentationinretinoblastoma AT mollannettec multiviewconvolutionalneuralnetworksforautomatedocularstructureandtumorsegmentationinretinoblastoma AT bachcuadramerixtell multiviewconvolutionalneuralnetworksforautomatedocularstructureandtumorsegmentationinretinoblastoma AT degraafpim multiviewconvolutionalneuralnetworksforautomatedocularstructureandtumorsegmentationinretinoblastoma AT steenwijkmartijnd multiviewconvolutionalneuralnetworksforautomatedocularstructureandtumorsegmentationinretinoblastoma |