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Deep Graph Mapper: Seeing Graphs Through the Neural Lens

Graph summarization has received much attention lately, with various works tackling the challenge of defining pooling operators on data regions with arbitrary structures. These contrast the grid-like ones encountered in image inputs, where techniques such as max-pooling have been enough to show empi...

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Autores principales: Bodnar, Cristian, Cangea, Cătălina, Liò, Pietro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8285761/
https://www.ncbi.nlm.nih.gov/pubmed/34282408
http://dx.doi.org/10.3389/fdata.2021.680535
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author Bodnar, Cristian
Cangea, Cătălina
Liò, Pietro
author_facet Bodnar, Cristian
Cangea, Cătălina
Liò, Pietro
author_sort Bodnar, Cristian
collection PubMed
description Graph summarization has received much attention lately, with various works tackling the challenge of defining pooling operators on data regions with arbitrary structures. These contrast the grid-like ones encountered in image inputs, where techniques such as max-pooling have been enough to show empirical success. In this work, we merge the Mapper algorithm with the expressive power of graph neural networks to produce topologically grounded graph summaries. We demonstrate the suitability of Mapper as a topological framework for graph pooling by proving that Mapper is a generalization of pooling methods based on soft cluster assignments. Building upon this, we show how easy it is to design novel pooling algorithms that obtain competitive results with other state-of-the-art methods. Additionally, we use our method to produce GNN-aided visualisations of attributed complex networks.
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spelling pubmed-82857612021-07-18 Deep Graph Mapper: Seeing Graphs Through the Neural Lens Bodnar, Cristian Cangea, Cătălina Liò, Pietro Front Big Data Big Data Graph summarization has received much attention lately, with various works tackling the challenge of defining pooling operators on data regions with arbitrary structures. These contrast the grid-like ones encountered in image inputs, where techniques such as max-pooling have been enough to show empirical success. In this work, we merge the Mapper algorithm with the expressive power of graph neural networks to produce topologically grounded graph summaries. We demonstrate the suitability of Mapper as a topological framework for graph pooling by proving that Mapper is a generalization of pooling methods based on soft cluster assignments. Building upon this, we show how easy it is to design novel pooling algorithms that obtain competitive results with other state-of-the-art methods. Additionally, we use our method to produce GNN-aided visualisations of attributed complex networks. Frontiers Media S.A. 2021-06-16 /pmc/articles/PMC8285761/ /pubmed/34282408 http://dx.doi.org/10.3389/fdata.2021.680535 Text en Copyright © 2021 Bodnar, Cangea and Liò. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Big Data
Bodnar, Cristian
Cangea, Cătălina
Liò, Pietro
Deep Graph Mapper: Seeing Graphs Through the Neural Lens
title Deep Graph Mapper: Seeing Graphs Through the Neural Lens
title_full Deep Graph Mapper: Seeing Graphs Through the Neural Lens
title_fullStr Deep Graph Mapper: Seeing Graphs Through the Neural Lens
title_full_unstemmed Deep Graph Mapper: Seeing Graphs Through the Neural Lens
title_short Deep Graph Mapper: Seeing Graphs Through the Neural Lens
title_sort deep graph mapper: seeing graphs through the neural lens
topic Big Data
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8285761/
https://www.ncbi.nlm.nih.gov/pubmed/34282408
http://dx.doi.org/10.3389/fdata.2021.680535
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