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Deep Graph Mapper: Seeing Graphs Through the Neural Lens
Graph summarization has received much attention lately, with various works tackling the challenge of defining pooling operators on data regions with arbitrary structures. These contrast the grid-like ones encountered in image inputs, where techniques such as max-pooling have been enough to show empi...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8285761/ https://www.ncbi.nlm.nih.gov/pubmed/34282408 http://dx.doi.org/10.3389/fdata.2021.680535 |
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author | Bodnar, Cristian Cangea, Cătălina Liò, Pietro |
author_facet | Bodnar, Cristian Cangea, Cătălina Liò, Pietro |
author_sort | Bodnar, Cristian |
collection | PubMed |
description | Graph summarization has received much attention lately, with various works tackling the challenge of defining pooling operators on data regions with arbitrary structures. These contrast the grid-like ones encountered in image inputs, where techniques such as max-pooling have been enough to show empirical success. In this work, we merge the Mapper algorithm with the expressive power of graph neural networks to produce topologically grounded graph summaries. We demonstrate the suitability of Mapper as a topological framework for graph pooling by proving that Mapper is a generalization of pooling methods based on soft cluster assignments. Building upon this, we show how easy it is to design novel pooling algorithms that obtain competitive results with other state-of-the-art methods. Additionally, we use our method to produce GNN-aided visualisations of attributed complex networks. |
format | Online Article Text |
id | pubmed-8285761 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-82857612021-07-18 Deep Graph Mapper: Seeing Graphs Through the Neural Lens Bodnar, Cristian Cangea, Cătălina Liò, Pietro Front Big Data Big Data Graph summarization has received much attention lately, with various works tackling the challenge of defining pooling operators on data regions with arbitrary structures. These contrast the grid-like ones encountered in image inputs, where techniques such as max-pooling have been enough to show empirical success. In this work, we merge the Mapper algorithm with the expressive power of graph neural networks to produce topologically grounded graph summaries. We demonstrate the suitability of Mapper as a topological framework for graph pooling by proving that Mapper is a generalization of pooling methods based on soft cluster assignments. Building upon this, we show how easy it is to design novel pooling algorithms that obtain competitive results with other state-of-the-art methods. Additionally, we use our method to produce GNN-aided visualisations of attributed complex networks. Frontiers Media S.A. 2021-06-16 /pmc/articles/PMC8285761/ /pubmed/34282408 http://dx.doi.org/10.3389/fdata.2021.680535 Text en Copyright © 2021 Bodnar, Cangea and Liò. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Big Data Bodnar, Cristian Cangea, Cătălina Liò, Pietro Deep Graph Mapper: Seeing Graphs Through the Neural Lens |
title | Deep Graph Mapper: Seeing Graphs Through the Neural Lens |
title_full | Deep Graph Mapper: Seeing Graphs Through the Neural Lens |
title_fullStr | Deep Graph Mapper: Seeing Graphs Through the Neural Lens |
title_full_unstemmed | Deep Graph Mapper: Seeing Graphs Through the Neural Lens |
title_short | Deep Graph Mapper: Seeing Graphs Through the Neural Lens |
title_sort | deep graph mapper: seeing graphs through the neural lens |
topic | Big Data |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8285761/ https://www.ncbi.nlm.nih.gov/pubmed/34282408 http://dx.doi.org/10.3389/fdata.2021.680535 |
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