Cargando…

Post-genotyping optimization of dataset formation could affect genetic diversity parameters: an example of analyses with alpine goat breeds

BACKGROUND: Local breeds retained unique genetic variability important for adaptive potential especially in light of challenges related to climate change. Our first objective was to perform, for the first time, a genome-wide diversity characterization using Illumina GoatSNP50 BeadChip of autochthono...

Descripción completa

Detalles Bibliográficos
Autores principales:	Pogorevc, Neža, Simčič, Mojca, Khayatzadeh, Negar, Sölkner, Johann, Berger, Beate, Bojkovski, Danijela, Zorc, Minja, Dovč, Peter, Medugorac, Ivica, Horvat, Simon
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2021
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8285797/ https://www.ncbi.nlm.nih.gov/pubmed/34273960 http://dx.doi.org/10.1186/s12864-021-07802-z

Ejemplares similares

TLR2 polymorphism (rs650082970) is associated with somatic cell count in goat milk
por: Ogorevc, Jernej, et al.
Publicado: (2019)

Recovery of Native Genetic Background in Admixed Populations Using Haplotypes, Phenotypes, and Pedigree Information – Using Cika Cattle as a Case Breed
por: Simčič, Mojca, et al.
Publicado: (2015)

The Consequences of Mitochondrial T10432C Mutation in Cika Cattle: A “Potential” Model for Leber’s Hereditary Optic Neuropathy
por: Novosel, Dinko, et al.
Publicado: (2022)

Population Structure and Genetic Diversity of Sheep Breeds in the Kyrgyzstan
por: Deniskova, Tatiana, et al.
Publicado: (2019)

Identification of potentially pathogenic variants for autism spectrum disorders using gene-burden analysis
por: Rihar, Nika, et al.
Publicado: (2023)

Genetic Variability of MicroRNA Genes in 15 Animal Species
por: Zorc, Minja, et al.
Publicado: (2015)

Genomic Characterization of the Istrian Shorthaired Hound
por: Djurkin Kušec, Ivona, et al.
Publicado: (2020)

AUTALASSO: an automatic adaptive LASSO for genome-wide prediction
por: Waldmann, Patrik, et al.
Publicado: (2019)

Catalog of MicroRNA Seed Polymorphisms in Vertebrates
por: Zorc, Minja, et al.
Publicado: (2012)

Genome-Wide and Species-Wide In Silico Screening for Intragenic MicroRNAs in Human, Mouse and Chicken
por: Godnic, Irena, et al.
Publicado: (2013)

Population structure and genetic history of Tibetan Terriers
por: Janeš, Mateja, et al.
Publicado: (2019)

Syndromic male subfertility: A network view of genome–phenome associations
por: Mikec, Špela, et al.
Publicado: (2022)

Catalog of genetic variants within mature microRNA seed regions in chicken
por: Zorc, Minja, et al.
Publicado: (2015)

Pivotal role of the muscle-contraction pathway in cryptorchidism and evidence for genomic connections with cardiomyopathy pathways in RASopathies
por: Cannistraci, Carlo V, et al.
Publicado: (2013)

Comparison of Cortisol Concentrations in Different Matrices in Alpine Ibex (Capra ibex) at the Zoo
por: Kastelic, Marjan, et al.
Publicado: (2023)

Differentiation of some Pramenka sheep breeds based on morphometric characteristics
por: Marković, Božidarka, et al.
Publicado: (2019)

Large‐scale mitogenome sequencing reveals consecutive expansions of domestic taurine cattle and supports sporadic aurochs introgression
por: Cubric‐Curik, Vlatka, et al.
Publicado: (2021)

History of Lipizzan horse maternal lines as revealed by mtDNA analysis
por: Kavar, Tatjana, et al.
Publicado: (2002)

Genetic parameters of dairy traits in the Alpine and Saanen goat breeds
por: Bélichon, Sophie, et al.
Publicado: (1999)

Ethiopian indigenous goats offer insights into past and recent demographic dynamics and local adaptation in sub‐Saharan African goats
por: Tarekegn, Getinet M., et al.
Publicado: (2021)

Immune related gene expression in worker honey bee (Apis mellifera carnica) pupae exposed to neonicotinoid thiamethoxam and Varroa mites (Varroa destructor)
por: Tesovnik, Tanja, et al.
Publicado: (2017)

Response of adult honey bees treated in larval stage with prochloraz to infection with Nosema ceranae
por: Glavinic, Uros, et al.
Publicado: (2019)

MicroRNA Polymorphisms in Cancer: A Literature Analysis
por: Pipan, Veronika, et al.
Publicado: (2015)

Genetic parameters for first lactation dairy traits in the Alpine and Saanen goat breeds
por: Boichard, D, et al.
Publicado: (1989)

Complete mitochondrial genomes of Karchaev goat (Capra hircus)
por: Rodionov, Andrey N., et al.
Publicado: (2020)

Introgression from Domestic Goat Generated Variation at the Major Histocompatibility Complex of Alpine Ibex
por: Grossen, Christine, et al.
Publicado: (2014)

NMR Lipid Profile of Milk from Alpine Goats with Supplemented Hempseed and Linseed Diets
por: Boccia, Antonella Caterina, et al.
Publicado: (2020)

Hybridization between Alpine Ibex and Domestic Goat in the Alps: A Sporadic and Localized Phenomenon?
por: Moroni, Barbara, et al.
Publicado: (2022)

Morphometric Characterization of Local Goat Breeds in Two Agroecological Zones of Burkina Faso, West Africa
por: Akounda, Badjibassa, et al.
Publicado: (2023)

Population structure, inbreeding and admixture in local cattle populations managed by community‐based breeding programs in Burkina Faso
por: Ouédraogo, Dominique, et al.
Publicado: (2021)

The Perspective of Arctic–Alpine Species in Southernmost Localities: The Example of Kalmia procumbens in the Pyrenees and Carpathians
por: Walas, Łukasz, et al.
Publicado: (2023)

Timing and Extent of Inbreeding in African Goats
por: Nandolo, Wilson, et al.
Publicado: (2019)

A case study on strains of Buša cattle structured into a metapopulation to show the potential for use of single-nucleotide polymorphism genotyping in the management of small, cross-border populations of livestock breeds and varieties
por: Broxham, Elli T., et al.
Publicado: (2015)

How shrub encroachment under climate change could threaten pollination services for alpine wildflowers: A case study using the alpine skypilot, Polemonium viscosum
por: Kettenbach, Jessica A., et al.
Publicado: (2017)

The effects of natural mating and artificial insemination using cryopreserved buck semen on reproductive performance in Alpine goats
por: Agossou, Dehouegnon Jerry, et al.
Publicado: (2018)

Comparison of gluteus medius muscle activity in Haflinger and Noriker horses with polysaccharide storage myopathy
por: Zsoldos, Rebeka Roza, et al.
Publicado: (2021)

SNP-Based Genotyping Provides Insight Into the West Asian Origin of Russian Local Goats
por: Deniskova, Tatiana E., et al.
Publicado: (2021)

Genetic Diversity of Montenegrin Local Sheep Breeds Based on Microsatellite Markers
por: Marković, Milan, et al.
Publicado: (2022)

Prevalence and genotype distribution of caprine papillomavirus in peripheral blood of healthy goats in farms from three European countries
por: Cutarelli, Anna, et al.
Publicado: (2023)

Alpine permafrost could account for a quarter of thawed carbon based on Plio-Pleistocene paleoclimate analogue
por: Cheng, Feng, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_s3pqg9se4lprpu6u7592p9ruhc