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Cutibacterium modestum and “Propionibacterium humerusii” represent the same species that is commonly misidentified as Cutibacterium acnes

Cutibacterium spp. play an increasing role in soft tissue and implant-associated infections. We isolated a novel Cutibacterium spp. from an implant and investigated this isolate using multiple identification approaches. Correct identification was hampered by inconsistent reference data. The isolate...

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Autores principales: Goldenberger, Daniel, Søgaard, Kirstine K., Cuénod, Aline, Seth-Smith, Helena, de Menezes, Daniel, Vandamme, Peter, Egli, Adrian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8286925/
https://www.ncbi.nlm.nih.gov/pubmed/33961161
http://dx.doi.org/10.1007/s10482-021-01589-5
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author Goldenberger, Daniel
Søgaard, Kirstine K.
Cuénod, Aline
Seth-Smith, Helena
de Menezes, Daniel
Vandamme, Peter
Egli, Adrian
author_facet Goldenberger, Daniel
Søgaard, Kirstine K.
Cuénod, Aline
Seth-Smith, Helena
de Menezes, Daniel
Vandamme, Peter
Egli, Adrian
author_sort Goldenberger, Daniel
collection PubMed
description Cutibacterium spp. play an increasing role in soft tissue and implant-associated infections. We isolated a novel Cutibacterium spp. from an implant and investigated this isolate using multiple identification approaches. Correct identification was hampered by inconsistent reference data. The isolate was characterised using conventional methods such as Gram stain, MALDI-TOF MS, and antimicrobial susceptibility testing against multiple antimicrobials. Partial 16S rRNA gene sequencing and whole genome sequencing were also performed. In addition, we summarised the available published sequence data and compared prior data to our strain. Conventional phenotypic identification of our isolate resulted in Cutibacterium spp. After analysis of 16S rRNA gene and genome sequences, our isolate was identified as C. modestum, a very recently described species. The 16S rRNA gene analysis was hampered by three incorrect nucleotides within the 16S rRNA gene reference sequence of C. modestum M12(T) (accession no. LC466959). We also clearly demonstrate that this novel species is identical to tentatively named “Propionibacterium humerusii”. Retrospective data analysis indicates that C. modestum is a clinically important Cutibacterium species often misidentified as C. acnes. The isolation and identification of Cutibacterium spp. is still a challenge. The correct description of very recently named C. modestum and the availability of a correct 16S rRNA sequence of the type strain may help to clarify the taxonomical uncertainty concerning “P. humerusii”. The novel C. modestum is an additional, clinically important species within the genus Cutibacterium and may represent a new member of the human skin microbiome. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10482-021-01589-5.
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spelling pubmed-82869252021-07-20 Cutibacterium modestum and “Propionibacterium humerusii” represent the same species that is commonly misidentified as Cutibacterium acnes Goldenberger, Daniel Søgaard, Kirstine K. Cuénod, Aline Seth-Smith, Helena de Menezes, Daniel Vandamme, Peter Egli, Adrian Antonie Van Leeuwenhoek Short Communication Cutibacterium spp. play an increasing role in soft tissue and implant-associated infections. We isolated a novel Cutibacterium spp. from an implant and investigated this isolate using multiple identification approaches. Correct identification was hampered by inconsistent reference data. The isolate was characterised using conventional methods such as Gram stain, MALDI-TOF MS, and antimicrobial susceptibility testing against multiple antimicrobials. Partial 16S rRNA gene sequencing and whole genome sequencing were also performed. In addition, we summarised the available published sequence data and compared prior data to our strain. Conventional phenotypic identification of our isolate resulted in Cutibacterium spp. After analysis of 16S rRNA gene and genome sequences, our isolate was identified as C. modestum, a very recently described species. The 16S rRNA gene analysis was hampered by three incorrect nucleotides within the 16S rRNA gene reference sequence of C. modestum M12(T) (accession no. LC466959). We also clearly demonstrate that this novel species is identical to tentatively named “Propionibacterium humerusii”. Retrospective data analysis indicates that C. modestum is a clinically important Cutibacterium species often misidentified as C. acnes. The isolation and identification of Cutibacterium spp. is still a challenge. The correct description of very recently named C. modestum and the availability of a correct 16S rRNA sequence of the type strain may help to clarify the taxonomical uncertainty concerning “P. humerusii”. The novel C. modestum is an additional, clinically important species within the genus Cutibacterium and may represent a new member of the human skin microbiome. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10482-021-01589-5. Springer International Publishing 2021-05-07 2021 /pmc/articles/PMC8286925/ /pubmed/33961161 http://dx.doi.org/10.1007/s10482-021-01589-5 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Short Communication
Goldenberger, Daniel
Søgaard, Kirstine K.
Cuénod, Aline
Seth-Smith, Helena
de Menezes, Daniel
Vandamme, Peter
Egli, Adrian
Cutibacterium modestum and “Propionibacterium humerusii” represent the same species that is commonly misidentified as Cutibacterium acnes
title Cutibacterium modestum and “Propionibacterium humerusii” represent the same species that is commonly misidentified as Cutibacterium acnes
title_full Cutibacterium modestum and “Propionibacterium humerusii” represent the same species that is commonly misidentified as Cutibacterium acnes
title_fullStr Cutibacterium modestum and “Propionibacterium humerusii” represent the same species that is commonly misidentified as Cutibacterium acnes
title_full_unstemmed Cutibacterium modestum and “Propionibacterium humerusii” represent the same species that is commonly misidentified as Cutibacterium acnes
title_short Cutibacterium modestum and “Propionibacterium humerusii” represent the same species that is commonly misidentified as Cutibacterium acnes
title_sort cutibacterium modestum and “propionibacterium humerusii” represent the same species that is commonly misidentified as cutibacterium acnes
topic Short Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8286925/
https://www.ncbi.nlm.nih.gov/pubmed/33961161
http://dx.doi.org/10.1007/s10482-021-01589-5
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