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Online Interactive Platform for COVID-19 Literature Visual Analytics: Platform Development Study

BACKGROUND: Papers on COVID-19 are being published at a high rate and concern many different topics. Innovative tools are needed to aid researchers to find patterns in this vast amount of literature to identify subsets of interest in an automated fashion. OBJECTIVE: We present a new online software...

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Detalles Bibliográficos
Autores principales: Moran, Addy, Hampton, Shawn, Dowson, Scott, Dagdelen, John, Trewartha, Amalie, Ceder, Gerbrand, Persson, Kristin, Saxon, Elise, Barker, Andrew, Charles, Lauren, Webb-Robertson, Bobbie-Jo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: JMIR Publications 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8288648/
https://www.ncbi.nlm.nih.gov/pubmed/34138726
http://dx.doi.org/10.2196/26995
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author Moran, Addy
Hampton, Shawn
Dowson, Scott
Dagdelen, John
Trewartha, Amalie
Ceder, Gerbrand
Persson, Kristin
Saxon, Elise
Barker, Andrew
Charles, Lauren
Webb-Robertson, Bobbie-Jo
author_facet Moran, Addy
Hampton, Shawn
Dowson, Scott
Dagdelen, John
Trewartha, Amalie
Ceder, Gerbrand
Persson, Kristin
Saxon, Elise
Barker, Andrew
Charles, Lauren
Webb-Robertson, Bobbie-Jo
author_sort Moran, Addy
collection PubMed
description BACKGROUND: Papers on COVID-19 are being published at a high rate and concern many different topics. Innovative tools are needed to aid researchers to find patterns in this vast amount of literature to identify subsets of interest in an automated fashion. OBJECTIVE: We present a new online software resource with a friendly user interface that allows users to query and interact with visual representations of relationships between publications. METHODS: We publicly released an application called PLATIPUS (Publication Literature Analysis and Text Interaction Platform for User Studies) that allows researchers to interact with literature supplied by COVIDScholar via a visual analytics platform. This tool contains standard filtering capabilities based on authors, journals, high-level categories, and various research-specific details via natural language processing and dozens of customizable visualizations that dynamically update from a researcher’s query. RESULTS: PLATIPUS is available online and currently links to over 100,000 publications and is still growing. This application has the potential to transform how COVID-19 researchers use public literature to enable their research. CONCLUSIONS: The PLATIPUS application provides the end user with a variety of ways to search, filter, and visualize over 100,00 COVID-19 publications.
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spelling pubmed-82886482021-08-03 Online Interactive Platform for COVID-19 Literature Visual Analytics: Platform Development Study Moran, Addy Hampton, Shawn Dowson, Scott Dagdelen, John Trewartha, Amalie Ceder, Gerbrand Persson, Kristin Saxon, Elise Barker, Andrew Charles, Lauren Webb-Robertson, Bobbie-Jo J Med Internet Res Original Paper BACKGROUND: Papers on COVID-19 are being published at a high rate and concern many different topics. Innovative tools are needed to aid researchers to find patterns in this vast amount of literature to identify subsets of interest in an automated fashion. OBJECTIVE: We present a new online software resource with a friendly user interface that allows users to query and interact with visual representations of relationships between publications. METHODS: We publicly released an application called PLATIPUS (Publication Literature Analysis and Text Interaction Platform for User Studies) that allows researchers to interact with literature supplied by COVIDScholar via a visual analytics platform. This tool contains standard filtering capabilities based on authors, journals, high-level categories, and various research-specific details via natural language processing and dozens of customizable visualizations that dynamically update from a researcher’s query. RESULTS: PLATIPUS is available online and currently links to over 100,000 publications and is still growing. This application has the potential to transform how COVID-19 researchers use public literature to enable their research. CONCLUSIONS: The PLATIPUS application provides the end user with a variety of ways to search, filter, and visualize over 100,00 COVID-19 publications. JMIR Publications 2021-07-16 /pmc/articles/PMC8288648/ /pubmed/34138726 http://dx.doi.org/10.2196/26995 Text en ©Addy Moran, Shawn Hampton, Scott Dowson, John Dagdelen, Amalie Trewartha, Gerbrand Ceder, Kristin Persson, Elise Saxon, Andrew Barker, Lauren Charles, Bobbie-Jo Webb-Robertson. Originally published in the Journal of Medical Internet Research (https://www.jmir.org), 16.07.2021. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in the Journal of Medical Internet Research, is properly cited. The complete bibliographic information, a link to the original publication on https://www.jmir.org/, as well as this copyright and license information must be included.
spellingShingle Original Paper
Moran, Addy
Hampton, Shawn
Dowson, Scott
Dagdelen, John
Trewartha, Amalie
Ceder, Gerbrand
Persson, Kristin
Saxon, Elise
Barker, Andrew
Charles, Lauren
Webb-Robertson, Bobbie-Jo
Online Interactive Platform for COVID-19 Literature Visual Analytics: Platform Development Study
title Online Interactive Platform for COVID-19 Literature Visual Analytics: Platform Development Study
title_full Online Interactive Platform for COVID-19 Literature Visual Analytics: Platform Development Study
title_fullStr Online Interactive Platform for COVID-19 Literature Visual Analytics: Platform Development Study
title_full_unstemmed Online Interactive Platform for COVID-19 Literature Visual Analytics: Platform Development Study
title_short Online Interactive Platform for COVID-19 Literature Visual Analytics: Platform Development Study
title_sort online interactive platform for covid-19 literature visual analytics: platform development study
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8288648/
https://www.ncbi.nlm.nih.gov/pubmed/34138726
http://dx.doi.org/10.2196/26995
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