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Understanding divergent domestication traits from the whole-genome sequencing of swamp- and river-buffalo populations
Domesticated buffaloes have been integral to rice-paddy agro-ecosystems for millennia, yet relatively little is known about the buffalo genomics. Here, we sequenced and assembled reference genomes for both swamp and river buffaloes and we re-sequenced 230 individuals (132 swamp buffaloes and 98 rive...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Oxford University Press
2020
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| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8289072/ https://www.ncbi.nlm.nih.gov/pubmed/34692087 http://dx.doi.org/10.1093/nsr/nwaa024 |
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| author | Luo, Xier Zhou, Yu Zhang, Bing Zhang, Yi Wang, Xiaobo Feng, Tong Li, Zhipeng Cui, Kuiqing Wang, Zhiqiang Luo, Chan Li, Hui Deng, Yanfei Lu, Fenghua Han, Jianlin Miao, Yongwang Mao, Huaming Yi, Xiaoyan Ai, Cheng Wu, Shigang Li, Alun Wu, Zhichao Zhuo, Zijun Da Giang, Do Mitra, Bikash Vahidi, Mohammad Farhad Mansoor, Shahid Al-Bayatti, Sahar Ahmed Sari, Eka Meutia Gorkhali, Neena Amatya Prastowo, Sigit Shafique, Laiba Ye, Guoyou Qian, Qian Chen, Baoshan Shi, Deshun Ruan, Jue Liu, Qingyou |
| author_facet | Luo, Xier Zhou, Yu Zhang, Bing Zhang, Yi Wang, Xiaobo Feng, Tong Li, Zhipeng Cui, Kuiqing Wang, Zhiqiang Luo, Chan Li, Hui Deng, Yanfei Lu, Fenghua Han, Jianlin Miao, Yongwang Mao, Huaming Yi, Xiaoyan Ai, Cheng Wu, Shigang Li, Alun Wu, Zhichao Zhuo, Zijun Da Giang, Do Mitra, Bikash Vahidi, Mohammad Farhad Mansoor, Shahid Al-Bayatti, Sahar Ahmed Sari, Eka Meutia Gorkhali, Neena Amatya Prastowo, Sigit Shafique, Laiba Ye, Guoyou Qian, Qian Chen, Baoshan Shi, Deshun Ruan, Jue Liu, Qingyou |
| author_sort | Luo, Xier |
| collection | PubMed |
| description | Domesticated buffaloes have been integral to rice-paddy agro-ecosystems for millennia, yet relatively little is known about the buffalo genomics. Here, we sequenced and assembled reference genomes for both swamp and river buffaloes and we re-sequenced 230 individuals (132 swamp buffaloes and 98 river buffaloes) sampled from across Asia and Europe. Beyond the many actionable insights that our study revealed about the domestication, basic physiology and breeding of buffalo, we made the striking discovery that the divergent domestication traits between swamp and river buffaloes can be explained with recent selections of genes on social behavior, digestion metabolism, strengths and milk production. |
| format | Online Article Text |
| id | pubmed-8289072 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2020 |
| publisher | Oxford University Press |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-82890722021-10-21 Understanding divergent domestication traits from the whole-genome sequencing of swamp- and river-buffalo populations Luo, Xier Zhou, Yu Zhang, Bing Zhang, Yi Wang, Xiaobo Feng, Tong Li, Zhipeng Cui, Kuiqing Wang, Zhiqiang Luo, Chan Li, Hui Deng, Yanfei Lu, Fenghua Han, Jianlin Miao, Yongwang Mao, Huaming Yi, Xiaoyan Ai, Cheng Wu, Shigang Li, Alun Wu, Zhichao Zhuo, Zijun Da Giang, Do Mitra, Bikash Vahidi, Mohammad Farhad Mansoor, Shahid Al-Bayatti, Sahar Ahmed Sari, Eka Meutia Gorkhali, Neena Amatya Prastowo, Sigit Shafique, Laiba Ye, Guoyou Qian, Qian Chen, Baoshan Shi, Deshun Ruan, Jue Liu, Qingyou Natl Sci Rev Research Article Domesticated buffaloes have been integral to rice-paddy agro-ecosystems for millennia, yet relatively little is known about the buffalo genomics. Here, we sequenced and assembled reference genomes for both swamp and river buffaloes and we re-sequenced 230 individuals (132 swamp buffaloes and 98 river buffaloes) sampled from across Asia and Europe. Beyond the many actionable insights that our study revealed about the domestication, basic physiology and breeding of buffalo, we made the striking discovery that the divergent domestication traits between swamp and river buffaloes can be explained with recent selections of genes on social behavior, digestion metabolism, strengths and milk production. Oxford University Press 2020-03 2020-02-17 /pmc/articles/PMC8289072/ /pubmed/34692087 http://dx.doi.org/10.1093/nsr/nwaa024 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of China Science Publishing & Media Ltd. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
| spellingShingle | Research Article Luo, Xier Zhou, Yu Zhang, Bing Zhang, Yi Wang, Xiaobo Feng, Tong Li, Zhipeng Cui, Kuiqing Wang, Zhiqiang Luo, Chan Li, Hui Deng, Yanfei Lu, Fenghua Han, Jianlin Miao, Yongwang Mao, Huaming Yi, Xiaoyan Ai, Cheng Wu, Shigang Li, Alun Wu, Zhichao Zhuo, Zijun Da Giang, Do Mitra, Bikash Vahidi, Mohammad Farhad Mansoor, Shahid Al-Bayatti, Sahar Ahmed Sari, Eka Meutia Gorkhali, Neena Amatya Prastowo, Sigit Shafique, Laiba Ye, Guoyou Qian, Qian Chen, Baoshan Shi, Deshun Ruan, Jue Liu, Qingyou Understanding divergent domestication traits from the whole-genome sequencing of swamp- and river-buffalo populations |
| title | Understanding divergent domestication traits from the whole-genome sequencing of swamp- and river-buffalo populations |
| title_full | Understanding divergent domestication traits from the whole-genome sequencing of swamp- and river-buffalo populations |
| title_fullStr | Understanding divergent domestication traits from the whole-genome sequencing of swamp- and river-buffalo populations |
| title_full_unstemmed | Understanding divergent domestication traits from the whole-genome sequencing of swamp- and river-buffalo populations |
| title_short | Understanding divergent domestication traits from the whole-genome sequencing of swamp- and river-buffalo populations |
| title_sort | understanding divergent domestication traits from the whole-genome sequencing of swamp- and river-buffalo populations |
| topic | Research Article |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8289072/ https://www.ncbi.nlm.nih.gov/pubmed/34692087 http://dx.doi.org/10.1093/nsr/nwaa024 |
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