Cargando…

Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis

The genera Catabacter (family ‘Catabacteraceae’) and Christensenella (family Christensenellaceae ) are close relatives within the phylum Firmicutes . Members of these genera are strictly anaerobic, non-spore-forming and short straight rods with diverse phenotypes. Phylogenetic analysis of 16S rRNA g...

Descripción completa

Detalles Bibliográficos
Autores principales: Liu, Xiaoying, Sutter, Jessica L., de la Cuesta-Zuluaga, Jacobo, Waters, Jillian L., Youngblut, Nicholas D., Ley, Ruth E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Microbiology Society 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8289216/
https://www.ncbi.nlm.nih.gov/pubmed/33881979
http://dx.doi.org/10.1099/ijsem.0.004774
_version_ 1783724255774507008
author Liu, Xiaoying
Sutter, Jessica L.
de la Cuesta-Zuluaga, Jacobo
Waters, Jillian L.
Youngblut, Nicholas D.
Ley, Ruth E.
author_facet Liu, Xiaoying
Sutter, Jessica L.
de la Cuesta-Zuluaga, Jacobo
Waters, Jillian L.
Youngblut, Nicholas D.
Ley, Ruth E.
author_sort Liu, Xiaoying
collection PubMed
description The genera Catabacter (family ‘Catabacteraceae’) and Christensenella (family Christensenellaceae ) are close relatives within the phylum Firmicutes . Members of these genera are strictly anaerobic, non-spore-forming and short straight rods with diverse phenotypes. Phylogenetic analysis of 16S rRNA genes suggest that Catabacter splits Christensenella into a polyphyletic clade. In an effort to ensure that family/genus names represent monophyletic clades, we performed a whole-genome based analysis of the genomes available for the cultured representatives of these genera: four species of Christensenella and two strains of Catabacter hongkongensis . A concatenated alignment of 135 shared protein sequences of single-copy core genes present in the included strains indicates that C. hongkongensis is indeed nested within the Christensenella clade. Based on their evolutionary relationship, we propose the transfer of Catabacter hongkongensis to the genus Christensenella as Christensenella hongkongensis comb. nov.
format Online
Article
Text
id pubmed-8289216
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Microbiology Society
record_format MEDLINE/PubMed
spelling pubmed-82892162021-07-20 Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis Liu, Xiaoying Sutter, Jessica L. de la Cuesta-Zuluaga, Jacobo Waters, Jillian L. Youngblut, Nicholas D. Ley, Ruth E. Int J Syst Evol Microbiol New Taxa The genera Catabacter (family ‘Catabacteraceae’) and Christensenella (family Christensenellaceae ) are close relatives within the phylum Firmicutes . Members of these genera are strictly anaerobic, non-spore-forming and short straight rods with diverse phenotypes. Phylogenetic analysis of 16S rRNA genes suggest that Catabacter splits Christensenella into a polyphyletic clade. In an effort to ensure that family/genus names represent monophyletic clades, we performed a whole-genome based analysis of the genomes available for the cultured representatives of these genera: four species of Christensenella and two strains of Catabacter hongkongensis . A concatenated alignment of 135 shared protein sequences of single-copy core genes present in the included strains indicates that C. hongkongensis is indeed nested within the Christensenella clade. Based on their evolutionary relationship, we propose the transfer of Catabacter hongkongensis to the genus Christensenella as Christensenella hongkongensis comb. nov. Microbiology Society 2021-04-21 /pmc/articles/PMC8289216/ /pubmed/33881979 http://dx.doi.org/10.1099/ijsem.0.004774 Text en © 2021 The Authors https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License.
spellingShingle New Taxa
Liu, Xiaoying
Sutter, Jessica L.
de la Cuesta-Zuluaga, Jacobo
Waters, Jillian L.
Youngblut, Nicholas D.
Ley, Ruth E.
Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis
title Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis
title_full Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis
title_fullStr Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis
title_full_unstemmed Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis
title_short Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis
title_sort reclassification of catabacter hongkongensis as christensenella hongkongensis comb. nov. based on whole genome analysis
topic New Taxa
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8289216/
https://www.ncbi.nlm.nih.gov/pubmed/33881979
http://dx.doi.org/10.1099/ijsem.0.004774
work_keys_str_mv AT liuxiaoying reclassificationofcatabacterhongkongensisaschristensenellahongkongensiscombnovbasedonwholegenomeanalysis
AT sutterjessical reclassificationofcatabacterhongkongensisaschristensenellahongkongensiscombnovbasedonwholegenomeanalysis
AT delacuestazuluagajacobo reclassificationofcatabacterhongkongensisaschristensenellahongkongensiscombnovbasedonwholegenomeanalysis
AT watersjillianl reclassificationofcatabacterhongkongensisaschristensenellahongkongensiscombnovbasedonwholegenomeanalysis
AT youngblutnicholasd reclassificationofcatabacterhongkongensisaschristensenellahongkongensiscombnovbasedonwholegenomeanalysis
AT leyruthe reclassificationofcatabacterhongkongensisaschristensenellahongkongensiscombnovbasedonwholegenomeanalysis