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Identifiers.org: Compact Identifier services in the cloud
MOTIVATION: Since its launch in 2010, Identifiers.org has become an important tool for the annotation and cross-referencing of Life Science data. In 2016, we established the Compact Identifier (CID) scheme (prefix: accession) to generate globally unique identifiers for data resources using their loc...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8289372/ https://www.ncbi.nlm.nih.gov/pubmed/33031499 http://dx.doi.org/10.1093/bioinformatics/btaa864 |
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author | Bernal-Llinares, Manuel Ferrer-Gómez, Javier Juty, Nick Goble, Carole Wimalaratne, Sarala M Hermjakob, Henning |
author_facet | Bernal-Llinares, Manuel Ferrer-Gómez, Javier Juty, Nick Goble, Carole Wimalaratne, Sarala M Hermjakob, Henning |
author_sort | Bernal-Llinares, Manuel |
collection | PubMed |
description | MOTIVATION: Since its launch in 2010, Identifiers.org has become an important tool for the annotation and cross-referencing of Life Science data. In 2016, we established the Compact Identifier (CID) scheme (prefix: accession) to generate globally unique identifiers for data resources using their locally assigned accession identifiers. Since then, we have developed and improved services to support the growing need to create, reference and resolve CIDs, in systems ranging from human readable text to cloud-based e-infrastructures, by providing high availability and low-latency cloud-based services, backed by a high-quality, manually curated resource. RESULTS: We describe a set of services that can be used to construct and resolve CIDs in Life Sciences and beyond. We have developed a new front end for accessing the Identifiers.org registry data and APIs to simplify integration of Identifiers.org CID services with third-party applications. We have also deployed the new Identifiers.org infrastructure in a commercial cloud environment, bringing our services closer to the data. AVAILABILITYAND IMPLEMENTATION: https://identifiers.org. |
format | Online Article Text |
id | pubmed-8289372 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-82893722021-07-20 Identifiers.org: Compact Identifier services in the cloud Bernal-Llinares, Manuel Ferrer-Gómez, Javier Juty, Nick Goble, Carole Wimalaratne, Sarala M Hermjakob, Henning Bioinformatics Applications Notes MOTIVATION: Since its launch in 2010, Identifiers.org has become an important tool for the annotation and cross-referencing of Life Science data. In 2016, we established the Compact Identifier (CID) scheme (prefix: accession) to generate globally unique identifiers for data resources using their locally assigned accession identifiers. Since then, we have developed and improved services to support the growing need to create, reference and resolve CIDs, in systems ranging from human readable text to cloud-based e-infrastructures, by providing high availability and low-latency cloud-based services, backed by a high-quality, manually curated resource. RESULTS: We describe a set of services that can be used to construct and resolve CIDs in Life Sciences and beyond. We have developed a new front end for accessing the Identifiers.org registry data and APIs to simplify integration of Identifiers.org CID services with third-party applications. We have also deployed the new Identifiers.org infrastructure in a commercial cloud environment, bringing our services closer to the data. AVAILABILITYAND IMPLEMENTATION: https://identifiers.org. Oxford University Press 2020-12-11 /pmc/articles/PMC8289372/ /pubmed/33031499 http://dx.doi.org/10.1093/bioinformatics/btaa864 Text en © The Author(s) 2020. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Applications Notes Bernal-Llinares, Manuel Ferrer-Gómez, Javier Juty, Nick Goble, Carole Wimalaratne, Sarala M Hermjakob, Henning Identifiers.org: Compact Identifier services in the cloud |
title | Identifiers.org: Compact Identifier services in the cloud |
title_full | Identifiers.org: Compact Identifier services in the cloud |
title_fullStr | Identifiers.org: Compact Identifier services in the cloud |
title_full_unstemmed | Identifiers.org: Compact Identifier services in the cloud |
title_short | Identifiers.org: Compact Identifier services in the cloud |
title_sort | identifiers.org: compact identifier services in the cloud |
topic | Applications Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8289372/ https://www.ncbi.nlm.nih.gov/pubmed/33031499 http://dx.doi.org/10.1093/bioinformatics/btaa864 |
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