Cargando…

Identifiers.org: Compact Identifier services in the cloud

MOTIVATION: Since its launch in 2010, Identifiers.org has become an important tool for the annotation and cross-referencing of Life Science data. In 2016, we established the Compact Identifier (CID) scheme (prefix: accession) to generate globally unique identifiers for data resources using their loc...

Descripción completa

Detalles Bibliográficos
Autores principales: Bernal-Llinares, Manuel, Ferrer-Gómez, Javier, Juty, Nick, Goble, Carole, Wimalaratne, Sarala M, Hermjakob, Henning
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8289372/
https://www.ncbi.nlm.nih.gov/pubmed/33031499
http://dx.doi.org/10.1093/bioinformatics/btaa864
_version_ 1783724288330694656
author Bernal-Llinares, Manuel
Ferrer-Gómez, Javier
Juty, Nick
Goble, Carole
Wimalaratne, Sarala M
Hermjakob, Henning
author_facet Bernal-Llinares, Manuel
Ferrer-Gómez, Javier
Juty, Nick
Goble, Carole
Wimalaratne, Sarala M
Hermjakob, Henning
author_sort Bernal-Llinares, Manuel
collection PubMed
description MOTIVATION: Since its launch in 2010, Identifiers.org has become an important tool for the annotation and cross-referencing of Life Science data. In 2016, we established the Compact Identifier (CID) scheme (prefix: accession) to generate globally unique identifiers for data resources using their locally assigned accession identifiers. Since then, we have developed and improved services to support the growing need to create, reference and resolve CIDs, in systems ranging from human readable text to cloud-based e-infrastructures, by providing high availability and low-latency cloud-based services, backed by a high-quality, manually curated resource. RESULTS: We describe a set of services that can be used to construct and resolve CIDs in Life Sciences and beyond. We have developed a new front end for accessing the Identifiers.org registry data and APIs to simplify integration of Identifiers.org CID services with third-party applications. We have also deployed the new Identifiers.org infrastructure in a commercial cloud environment, bringing our services closer to the data. AVAILABILITYAND IMPLEMENTATION: https://identifiers.org.
format Online
Article
Text
id pubmed-8289372
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-82893722021-07-20 Identifiers.org: Compact Identifier services in the cloud Bernal-Llinares, Manuel Ferrer-Gómez, Javier Juty, Nick Goble, Carole Wimalaratne, Sarala M Hermjakob, Henning Bioinformatics Applications Notes MOTIVATION: Since its launch in 2010, Identifiers.org has become an important tool for the annotation and cross-referencing of Life Science data. In 2016, we established the Compact Identifier (CID) scheme (prefix: accession) to generate globally unique identifiers for data resources using their locally assigned accession identifiers. Since then, we have developed and improved services to support the growing need to create, reference and resolve CIDs, in systems ranging from human readable text to cloud-based e-infrastructures, by providing high availability and low-latency cloud-based services, backed by a high-quality, manually curated resource. RESULTS: We describe a set of services that can be used to construct and resolve CIDs in Life Sciences and beyond. We have developed a new front end for accessing the Identifiers.org registry data and APIs to simplify integration of Identifiers.org CID services with third-party applications. We have also deployed the new Identifiers.org infrastructure in a commercial cloud environment, bringing our services closer to the data. AVAILABILITYAND IMPLEMENTATION: https://identifiers.org. Oxford University Press 2020-12-11 /pmc/articles/PMC8289372/ /pubmed/33031499 http://dx.doi.org/10.1093/bioinformatics/btaa864 Text en © The Author(s) 2020. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Bernal-Llinares, Manuel
Ferrer-Gómez, Javier
Juty, Nick
Goble, Carole
Wimalaratne, Sarala M
Hermjakob, Henning
Identifiers.org: Compact Identifier services in the cloud
title Identifiers.org: Compact Identifier services in the cloud
title_full Identifiers.org: Compact Identifier services in the cloud
title_fullStr Identifiers.org: Compact Identifier services in the cloud
title_full_unstemmed Identifiers.org: Compact Identifier services in the cloud
title_short Identifiers.org: Compact Identifier services in the cloud
title_sort identifiers.org: compact identifier services in the cloud
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8289372/
https://www.ncbi.nlm.nih.gov/pubmed/33031499
http://dx.doi.org/10.1093/bioinformatics/btaa864
work_keys_str_mv AT bernalllinaresmanuel identifiersorgcompactidentifierservicesinthecloud
AT ferrergomezjavier identifiersorgcompactidentifierservicesinthecloud
AT jutynick identifiersorgcompactidentifierservicesinthecloud
AT goblecarole identifiersorgcompactidentifierservicesinthecloud
AT wimalaratnesaralam identifiersorgcompactidentifierservicesinthecloud
AT hermjakobhenning identifiersorgcompactidentifierservicesinthecloud