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Targeted metabolomics identifies high performing diagnostic and prognostic biomarkers for COVID-19

Research exploring the development and outcome of COVID-19 infections has led to the need to find better diagnostic and prognostic biomarkers. This cross-sectional study used targeted metabolomics to identify potential COVID-19 biomarkers that predicted the course of the illness by assessing 110 end...

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Autores principales: López-Hernández, Yamilé, Monárrez-Espino, Joel, Oostdam, Ana-Sofía Herrera-van, Delgado, Julio Enrique Castañeda, Zhang, Lun, Zheng, Jiamin, Valdez, Juan José Oropeza, Mandal, Rupasri, González, Fátima de Lourdes Ochoa, Moreno, Juan Carlos Borrego, Trejo-Medinilla, Flor M., López, Jesús Adrián, Moreno, José Antonio Enciso, Wishart, David S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8290000/
https://www.ncbi.nlm.nih.gov/pubmed/34282210
http://dx.doi.org/10.1038/s41598-021-94171-y
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author López-Hernández, Yamilé
Monárrez-Espino, Joel
Oostdam, Ana-Sofía Herrera-van
Delgado, Julio Enrique Castañeda
Zhang, Lun
Zheng, Jiamin
Valdez, Juan José Oropeza
Mandal, Rupasri
González, Fátima de Lourdes Ochoa
Moreno, Juan Carlos Borrego
Trejo-Medinilla, Flor M.
López, Jesús Adrián
Moreno, José Antonio Enciso
Wishart, David S.
author_facet López-Hernández, Yamilé
Monárrez-Espino, Joel
Oostdam, Ana-Sofía Herrera-van
Delgado, Julio Enrique Castañeda
Zhang, Lun
Zheng, Jiamin
Valdez, Juan José Oropeza
Mandal, Rupasri
González, Fátima de Lourdes Ochoa
Moreno, Juan Carlos Borrego
Trejo-Medinilla, Flor M.
López, Jesús Adrián
Moreno, José Antonio Enciso
Wishart, David S.
author_sort López-Hernández, Yamilé
collection PubMed
description Research exploring the development and outcome of COVID-19 infections has led to the need to find better diagnostic and prognostic biomarkers. This cross-sectional study used targeted metabolomics to identify potential COVID-19 biomarkers that predicted the course of the illness by assessing 110 endogenous plasma metabolites from individuals admitted to a local hospital for diagnosis/treatment. Patients were classified into four groups (≈ 40 each) according to standard polymerase chain reaction (PCR) COVID-19 testing and disease course: PCR−/controls (i.e., non-COVID controls), PCR+/not-hospitalized, PCR+/hospitalized, and PCR+/intubated. Blood samples were collected within 2 days of admission/PCR testing. Metabolite concentration data, demographic data and clinical data were used to propose biomarkers and develop optimal regression models for the diagnosis and prognosis of COVID-19. The area under the receiver operating characteristic curve (AUC; 95% CI) was used to assess each models’ predictive value. A panel that included the kynurenine: tryptophan ratio, lysoPC a C26:0, and pyruvic acid discriminated non-COVID controls from PCR+/not-hospitalized (AUC = 0.947; 95% CI 0.931–0.962). A second panel consisting of C10:2, butyric acid, and pyruvic acid distinguished PCR+/not-hospitalized from PCR+/hospitalized and PCR+/intubated (AUC = 0.975; 95% CI 0.968–0.983). Only lysoPC a C28:0 differentiated PCR+/hospitalized from PCR+/intubated patients (AUC = 0.770; 95% CI 0.736–0.803). If additional studies with targeted metabolomics confirm the diagnostic value of these plasma biomarkers, such panels could eventually be of clinical use in medical practice.
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spelling pubmed-82900002021-07-21 Targeted metabolomics identifies high performing diagnostic and prognostic biomarkers for COVID-19 López-Hernández, Yamilé Monárrez-Espino, Joel Oostdam, Ana-Sofía Herrera-van Delgado, Julio Enrique Castañeda Zhang, Lun Zheng, Jiamin Valdez, Juan José Oropeza Mandal, Rupasri González, Fátima de Lourdes Ochoa Moreno, Juan Carlos Borrego Trejo-Medinilla, Flor M. López, Jesús Adrián Moreno, José Antonio Enciso Wishart, David S. Sci Rep Article Research exploring the development and outcome of COVID-19 infections has led to the need to find better diagnostic and prognostic biomarkers. This cross-sectional study used targeted metabolomics to identify potential COVID-19 biomarkers that predicted the course of the illness by assessing 110 endogenous plasma metabolites from individuals admitted to a local hospital for diagnosis/treatment. Patients were classified into four groups (≈ 40 each) according to standard polymerase chain reaction (PCR) COVID-19 testing and disease course: PCR−/controls (i.e., non-COVID controls), PCR+/not-hospitalized, PCR+/hospitalized, and PCR+/intubated. Blood samples were collected within 2 days of admission/PCR testing. Metabolite concentration data, demographic data and clinical data were used to propose biomarkers and develop optimal regression models for the diagnosis and prognosis of COVID-19. The area under the receiver operating characteristic curve (AUC; 95% CI) was used to assess each models’ predictive value. A panel that included the kynurenine: tryptophan ratio, lysoPC a C26:0, and pyruvic acid discriminated non-COVID controls from PCR+/not-hospitalized (AUC = 0.947; 95% CI 0.931–0.962). A second panel consisting of C10:2, butyric acid, and pyruvic acid distinguished PCR+/not-hospitalized from PCR+/hospitalized and PCR+/intubated (AUC = 0.975; 95% CI 0.968–0.983). Only lysoPC a C28:0 differentiated PCR+/hospitalized from PCR+/intubated patients (AUC = 0.770; 95% CI 0.736–0.803). If additional studies with targeted metabolomics confirm the diagnostic value of these plasma biomarkers, such panels could eventually be of clinical use in medical practice. Nature Publishing Group UK 2021-07-19 /pmc/articles/PMC8290000/ /pubmed/34282210 http://dx.doi.org/10.1038/s41598-021-94171-y Text en © The Author(s) 2021, corrected publication 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
López-Hernández, Yamilé
Monárrez-Espino, Joel
Oostdam, Ana-Sofía Herrera-van
Delgado, Julio Enrique Castañeda
Zhang, Lun
Zheng, Jiamin
Valdez, Juan José Oropeza
Mandal, Rupasri
González, Fátima de Lourdes Ochoa
Moreno, Juan Carlos Borrego
Trejo-Medinilla, Flor M.
López, Jesús Adrián
Moreno, José Antonio Enciso
Wishart, David S.
Targeted metabolomics identifies high performing diagnostic and prognostic biomarkers for COVID-19
title Targeted metabolomics identifies high performing diagnostic and prognostic biomarkers for COVID-19
title_full Targeted metabolomics identifies high performing diagnostic and prognostic biomarkers for COVID-19
title_fullStr Targeted metabolomics identifies high performing diagnostic and prognostic biomarkers for COVID-19
title_full_unstemmed Targeted metabolomics identifies high performing diagnostic and prognostic biomarkers for COVID-19
title_short Targeted metabolomics identifies high performing diagnostic and prognostic biomarkers for COVID-19
title_sort targeted metabolomics identifies high performing diagnostic and prognostic biomarkers for covid-19
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8290000/
https://www.ncbi.nlm.nih.gov/pubmed/34282210
http://dx.doi.org/10.1038/s41598-021-94171-y
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