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Plausible Pnicogen Bonding of epi-Cinchonidine as a Chiral Scaffold in Catalysis
As a non-covalent interaction of a chiral scaffold in catalysis, pnicogen bonding of epi-cinchonidine (epi-CD), a cinchona alkaloid, was simulated to consider whether the interaction can have the potential controlling enantiotopic face like hydrogen bonding. Among five reactive functional groups in...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8290064/ https://www.ncbi.nlm.nih.gov/pubmed/34295874 http://dx.doi.org/10.3389/fchem.2021.669515 |
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author | Ullah, Zakir Kim, Kang Venkanna, Arramshetti Kim, Hye su Kim, Moon Il Kim, Mi-hyun |
author_facet | Ullah, Zakir Kim, Kang Venkanna, Arramshetti Kim, Hye su Kim, Moon Il Kim, Mi-hyun |
author_sort | Ullah, Zakir |
collection | PubMed |
description | As a non-covalent interaction of a chiral scaffold in catalysis, pnicogen bonding of epi-cinchonidine (epi-CD), a cinchona alkaloid, was simulated to consider whether the interaction can have the potential controlling enantiotopic face like hydrogen bonding. Among five reactive functional groups in epi-CD, two stable complexes of the hydroxyl group (X-epi-CD1) at C(17) and of the quinoline ring (X-epi-CD2) at N(16) with pnictide family analytes [X = substituted phosphine (PX), i.e., F, Br, Cl, CF(3), CN, HO, NO(2), and CH(3), and pnictide family analytes, i.e., PBr(3), BiI(3), SbI(3), and AsI(3)] were predicted with intermolecular interaction energies, charge transfer (Q(Mulliken) and Q(NBO)), and band gap energies of HOMO–LUMO (Eg) at the B3LYP/6-31G(d,p) level of density functional theory. It was found that the dominant site of pnicogen bonding in epi-CD is the quinoline ring (N(16) atom) rather than the hydroxyl group (O(36) atom). In addition, the UV-Vis spectra of the complex were calculated by time-dependent density functional theory (TD-DFT) at the B3LYP/6-31+G(d,p) level and compared with experimental measurements. Through these calculations, two intermolecular interactions (H-bond vs. pnicogen bond) of epi-CD were compared. |
format | Online Article Text |
id | pubmed-8290064 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-82900642021-07-21 Plausible Pnicogen Bonding of epi-Cinchonidine as a Chiral Scaffold in Catalysis Ullah, Zakir Kim, Kang Venkanna, Arramshetti Kim, Hye su Kim, Moon Il Kim, Mi-hyun Front Chem Chemistry As a non-covalent interaction of a chiral scaffold in catalysis, pnicogen bonding of epi-cinchonidine (epi-CD), a cinchona alkaloid, was simulated to consider whether the interaction can have the potential controlling enantiotopic face like hydrogen bonding. Among five reactive functional groups in epi-CD, two stable complexes of the hydroxyl group (X-epi-CD1) at C(17) and of the quinoline ring (X-epi-CD2) at N(16) with pnictide family analytes [X = substituted phosphine (PX), i.e., F, Br, Cl, CF(3), CN, HO, NO(2), and CH(3), and pnictide family analytes, i.e., PBr(3), BiI(3), SbI(3), and AsI(3)] were predicted with intermolecular interaction energies, charge transfer (Q(Mulliken) and Q(NBO)), and band gap energies of HOMO–LUMO (Eg) at the B3LYP/6-31G(d,p) level of density functional theory. It was found that the dominant site of pnicogen bonding in epi-CD is the quinoline ring (N(16) atom) rather than the hydroxyl group (O(36) atom). In addition, the UV-Vis spectra of the complex were calculated by time-dependent density functional theory (TD-DFT) at the B3LYP/6-31+G(d,p) level and compared with experimental measurements. Through these calculations, two intermolecular interactions (H-bond vs. pnicogen bond) of epi-CD were compared. Frontiers Media S.A. 2021-07-06 /pmc/articles/PMC8290064/ /pubmed/34295874 http://dx.doi.org/10.3389/fchem.2021.669515 Text en Copyright © 2021 Ullah, Kim, Venkanna, Kim, Kim and Kim. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Chemistry Ullah, Zakir Kim, Kang Venkanna, Arramshetti Kim, Hye su Kim, Moon Il Kim, Mi-hyun Plausible Pnicogen Bonding of epi-Cinchonidine as a Chiral Scaffold in Catalysis |
title | Plausible Pnicogen Bonding of epi-Cinchonidine as a Chiral Scaffold in Catalysis |
title_full | Plausible Pnicogen Bonding of epi-Cinchonidine as a Chiral Scaffold in Catalysis |
title_fullStr | Plausible Pnicogen Bonding of epi-Cinchonidine as a Chiral Scaffold in Catalysis |
title_full_unstemmed | Plausible Pnicogen Bonding of epi-Cinchonidine as a Chiral Scaffold in Catalysis |
title_short | Plausible Pnicogen Bonding of epi-Cinchonidine as a Chiral Scaffold in Catalysis |
title_sort | plausible pnicogen bonding of epi-cinchonidine as a chiral scaffold in catalysis |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8290064/ https://www.ncbi.nlm.nih.gov/pubmed/34295874 http://dx.doi.org/10.3389/fchem.2021.669515 |
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