Genome sequence of the coffee root-knot nematode Meloidogyne exigua

Root-knot nematodes (Meloidogyne spp.) cause serious damages on most crops. Here, we report a high-quality genome sequence of Meloidogyne exigua (population Mex1, Costa Rica), a major pathogen of coffee. Its mitogenome (20,974 bp) was first assembled and annotated. The nuclear genome was then constr...

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Autores principales: Thi Phan, Ngan, Besnard, Guillaume, Ouazahrou, Rania, Sánchez, William Solano, Gil, Lisa, Manzi, Sophie, Bellafiore, Stéphane
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Exeley Inc. 2021
Materias:
Arts & Humanities
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8290501/
https://www.ncbi.nlm.nih.gov/pubmed/34296190
http://dx.doi.org/10.21307/jofnem-2021-065
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author Thi Phan, Ngan
Besnard, Guillaume
Ouazahrou, Rania
Sánchez, William Solano
Gil, Lisa
Manzi, Sophie
Bellafiore, Stéphane
author_facet Thi Phan, Ngan
Besnard, Guillaume
Ouazahrou, Rania
Sánchez, William Solano
Gil, Lisa
Manzi, Sophie
Bellafiore, Stéphane
author_sort Thi Phan, Ngan
collection PubMed
description Root-knot nematodes (Meloidogyne spp.) cause serious damages on most crops. Here, we report a high-quality genome sequence of Meloidogyne exigua (population Mex1, Costa Rica), a major pathogen of coffee. Its mitogenome (20,974 bp) was first assembled and annotated. The nuclear genome was then constructed consisting of 206 contigs, with an N50 length of 1.89 Mb and a total assembly length of 42.1 Mb.
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spelling pubmed-82905012021-07-21 Genome sequence of the coffee root-knot nematode Meloidogyne exigua Thi Phan, Ngan Besnard, Guillaume Ouazahrou, Rania Sánchez, William Solano Gil, Lisa Manzi, Sophie Bellafiore, Stéphane J Nematol Arts & Humanities Root-knot nematodes (Meloidogyne spp.) cause serious damages on most crops. Here, we report a high-quality genome sequence of Meloidogyne exigua (population Mex1, Costa Rica), a major pathogen of coffee. Its mitogenome (20,974 bp) was first assembled and annotated. The nuclear genome was then constructed consisting of 206 contigs, with an N50 length of 1.89 Mb and a total assembly length of 42.1 Mb. Exeley Inc. 2021-07-19 /pmc/articles/PMC8290501/ /pubmed/34296190 http://dx.doi.org/10.21307/jofnem-2021-065 Text en © 2021 Authors https://creativecommons.org/licenses/by/4.0/This is an Open Access article licensed under the Creative Commons CC BY 4.0 license, https://creativecommons.org/licenses/by/4.0/
spellingShingle Arts & Humanities
Thi Phan, Ngan
Besnard, Guillaume
Ouazahrou, Rania
Sánchez, William Solano
Gil, Lisa
Manzi, Sophie
Bellafiore, Stéphane
Genome sequence of the coffee root-knot nematode Meloidogyne exigua
title Genome sequence of the coffee root-knot nematode Meloidogyne exigua
title_full Genome sequence of the coffee root-knot nematode Meloidogyne exigua
title_fullStr Genome sequence of the coffee root-knot nematode Meloidogyne exigua
title_full_unstemmed Genome sequence of the coffee root-knot nematode Meloidogyne exigua
title_short Genome sequence of the coffee root-knot nematode Meloidogyne exigua
title_sort genome sequence of the coffee root-knot nematode meloidogyne exigua
topic Arts & Humanities
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8290501/
https://www.ncbi.nlm.nih.gov/pubmed/34296190
http://dx.doi.org/10.21307/jofnem-2021-065
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