The complete chloroplast genome of Agave fourcroydes

Agave fourcroydes (henequen) is the only cultivated Agave species in the Yucatan Peninsula, which is mainly used for fiber production. In the present study, we have successfully assembled the chloroplast (cp) genome of A. fourcroydes. The full length of the cp genome is 157,291 bp with a GC content...

Descripción completa

Detalles Bibliográficos
Autores principales: Qin, Xu, Yang, Xinli, Huang, Xing, Huang, Xianya, Peng, Xinyi, Liu, Ming, Chen, Tao, Yi, Kexian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8291057/
https://www.ncbi.nlm.nih.gov/pubmed/34350343
http://dx.doi.org/10.1080/23802359.2021.1950065
_version_ 1783724574257446912
author Qin, Xu
Yang, Xinli
Huang, Xing
Huang, Xianya
Peng, Xinyi
Liu, Ming
Chen, Tao
Yi, Kexian
author_facet Qin, Xu
Yang, Xinli
Huang, Xing
Huang, Xianya
Peng, Xinyi
Liu, Ming
Chen, Tao
Yi, Kexian
author_sort Qin, Xu
collection PubMed
description Agave fourcroydes (henequen) is the only cultivated Agave species in the Yucatan Peninsula, which is mainly used for fiber production. In the present study, we have successfully assembled the chloroplast (cp) genome of A. fourcroydes. The full length of the cp genome is 157,291 bp with a GC content at 37.8%. The cp genome is constructed with an inverted repeat region a (IRa) of 26,573 bp, a small single copy region (SSC) of 18,230 bp, an inverted repeat region b (IRb) of 26,573 bp and a large single copy region (LSC) of 85,915 bp. The annotation result reveals 132 genes on the cp genome, including 86 protein-coding genes, 38 tRNAs and 8 rRNAs. Phylogenetic tree reveals that A. fourcroydes is closely related with A. sisalana.
format Online
Article
Text
id pubmed-8291057
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-82910572021-08-03 The complete chloroplast genome of Agave fourcroydes Qin, Xu Yang, Xinli Huang, Xing Huang, Xianya Peng, Xinyi Liu, Ming Chen, Tao Yi, Kexian Mitochondrial DNA B Resour Mitogenome Announcement Agave fourcroydes (henequen) is the only cultivated Agave species in the Yucatan Peninsula, which is mainly used for fiber production. In the present study, we have successfully assembled the chloroplast (cp) genome of A. fourcroydes. The full length of the cp genome is 157,291 bp with a GC content at 37.8%. The cp genome is constructed with an inverted repeat region a (IRa) of 26,573 bp, a small single copy region (SSC) of 18,230 bp, an inverted repeat region b (IRb) of 26,573 bp and a large single copy region (LSC) of 85,915 bp. The annotation result reveals 132 genes on the cp genome, including 86 protein-coding genes, 38 tRNAs and 8 rRNAs. Phylogenetic tree reveals that A. fourcroydes is closely related with A. sisalana. Taylor & Francis 2021-07-19 /pmc/articles/PMC8291057/ /pubmed/34350343 http://dx.doi.org/10.1080/23802359.2021.1950065 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Qin, Xu
Yang, Xinli
Huang, Xing
Huang, Xianya
Peng, Xinyi
Liu, Ming
Chen, Tao
Yi, Kexian
The complete chloroplast genome of Agave fourcroydes
title The complete chloroplast genome of Agave fourcroydes
title_full The complete chloroplast genome of Agave fourcroydes
title_fullStr The complete chloroplast genome of Agave fourcroydes
title_full_unstemmed The complete chloroplast genome of Agave fourcroydes
title_short The complete chloroplast genome of Agave fourcroydes
title_sort complete chloroplast genome of agave fourcroydes
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8291057/
https://www.ncbi.nlm.nih.gov/pubmed/34350343
http://dx.doi.org/10.1080/23802359.2021.1950065
work_keys_str_mv AT qinxu thecompletechloroplastgenomeofagavefourcroydes
AT yangxinli thecompletechloroplastgenomeofagavefourcroydes
AT huangxing thecompletechloroplastgenomeofagavefourcroydes
AT huangxianya thecompletechloroplastgenomeofagavefourcroydes
AT pengxinyi thecompletechloroplastgenomeofagavefourcroydes
AT liuming thecompletechloroplastgenomeofagavefourcroydes
AT chentao thecompletechloroplastgenomeofagavefourcroydes
AT yikexian thecompletechloroplastgenomeofagavefourcroydes
AT qinxu completechloroplastgenomeofagavefourcroydes
AT yangxinli completechloroplastgenomeofagavefourcroydes
AT huangxing completechloroplastgenomeofagavefourcroydes
AT huangxianya completechloroplastgenomeofagavefourcroydes
AT pengxinyi completechloroplastgenomeofagavefourcroydes
AT liuming completechloroplastgenomeofagavefourcroydes
AT chentao completechloroplastgenomeofagavefourcroydes
AT yikexian completechloroplastgenomeofagavefourcroydes

Ejemplares similares