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The complete mitochondrial genome of the strawberry aphid Chaetosiphon fragaefolii Cockerell, 1901 (Hemiptera: Aphididae) from California, USA
The aphid Chaetosiphon fragaefolii Cockerell, 1901 is an agricultural pest and known vector of strawberry viruses. To better understand its biology and systematics, we performed a genomic analysis on C. fragaefolii collected from Quinalt strawberry plants from Pacific Grove, Monterey county, Califor...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Taylor & Francis
2021
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8291070/ https://www.ncbi.nlm.nih.gov/pubmed/34350347 http://dx.doi.org/10.1080/23802359.2021.1915206 |
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| author | Acosta, Miguel Alcantar, Diana Alier-Reyes, Ivan Alvarez, Carlos Arroyo, Crystal B. Calderon, David Cardenas, David Castro, Alejandro R. Companion, Janelle K. Constante, Cristian Diaz Telles, Evelyn S. Fletes, Gabriel Gama, Fatima C. Garcia Perez, Celia Garcia, Abigail Garcia, Bailey Gutierrez, Brandon S. Guzman, Karina L. Hernandez, Cecilia Hughey, Jeffery R. Flores, Monica Ibarra Jacobo, Adilene I. Lopez, Brianna Lopez-De Leon, Norma C. Martinez, Jaden D. Mendoza, Nayelli Perez, Kimberly Perez, Lucio J. Perez-Moreno, Milagros Pineda, Caitlin D. Pinedo, Elizabeth Portillo, Julissa G. Rico, Anais Ruiz, Laura V. Serrano, Genevie M. Sheldon, Kalia M. Terada, Hiroki Trujillo, Victoria A. Vazquez-Ramos, Clarissa Wang, Frank Flora, Dawn Zavala, Felipe G. |
| author_facet | Acosta, Miguel Alcantar, Diana Alier-Reyes, Ivan Alvarez, Carlos Arroyo, Crystal B. Calderon, David Cardenas, David Castro, Alejandro R. Companion, Janelle K. Constante, Cristian Diaz Telles, Evelyn S. Fletes, Gabriel Gama, Fatima C. Garcia Perez, Celia Garcia, Abigail Garcia, Bailey Gutierrez, Brandon S. Guzman, Karina L. Hernandez, Cecilia Hughey, Jeffery R. Flores, Monica Ibarra Jacobo, Adilene I. Lopez, Brianna Lopez-De Leon, Norma C. Martinez, Jaden D. Mendoza, Nayelli Perez, Kimberly Perez, Lucio J. Perez-Moreno, Milagros Pineda, Caitlin D. Pinedo, Elizabeth Portillo, Julissa G. Rico, Anais Ruiz, Laura V. Serrano, Genevie M. Sheldon, Kalia M. Terada, Hiroki Trujillo, Victoria A. Vazquez-Ramos, Clarissa Wang, Frank Flora, Dawn Zavala, Felipe G. |
| author_sort | Acosta, Miguel |
| collection | PubMed |
| description | The aphid Chaetosiphon fragaefolii Cockerell, 1901 is an agricultural pest and known vector of strawberry viruses. To better understand its biology and systematics, we performed a genomic analysis on C. fragaefolii collected from Quinalt strawberry plants from Pacific Grove, Monterey county, California, USA using Oxford Nanopore and Illumina sequencing. The resulting data were used to assemble the aphids complete mitogenome. The mitogenome of C. fragaefolii is 16,108 bp in length and contains 2 rRNA, 13 protein-coding, and 22 tRNA genes (GenBank accession number LC590896). The mitogenome is similar in content and organization to other Aphididae. Phylogenetic analysis of the C. fragaefolii mitogenome resolved it in a fully supported clade in the tribe Macrosiphini. Analysis of the cox1 barcode sequence of C. fragaefolii from California found exact and nearly identical sequences to C. fragaefolii and Chaetosiphon thomasi Hille Ris Lambers, 1953, suggesting the two species are conspecific. |
| format | Online Article Text |
| id | pubmed-8291070 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2021 |
| publisher | Taylor & Francis |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-82910702021-08-03 The complete mitochondrial genome of the strawberry aphid Chaetosiphon fragaefolii Cockerell, 1901 (Hemiptera: Aphididae) from California, USA Acosta, Miguel Alcantar, Diana Alier-Reyes, Ivan Alvarez, Carlos Arroyo, Crystal B. Calderon, David Cardenas, David Castro, Alejandro R. Companion, Janelle K. Constante, Cristian Diaz Telles, Evelyn S. Fletes, Gabriel Gama, Fatima C. Garcia Perez, Celia Garcia, Abigail Garcia, Bailey Gutierrez, Brandon S. Guzman, Karina L. Hernandez, Cecilia Hughey, Jeffery R. Flores, Monica Ibarra Jacobo, Adilene I. Lopez, Brianna Lopez-De Leon, Norma C. Martinez, Jaden D. Mendoza, Nayelli Perez, Kimberly Perez, Lucio J. Perez-Moreno, Milagros Pineda, Caitlin D. Pinedo, Elizabeth Portillo, Julissa G. Rico, Anais Ruiz, Laura V. Serrano, Genevie M. Sheldon, Kalia M. Terada, Hiroki Trujillo, Victoria A. Vazquez-Ramos, Clarissa Wang, Frank Flora, Dawn Zavala, Felipe G. Mitochondrial DNA B Resour Mitogenome Announcement The aphid Chaetosiphon fragaefolii Cockerell, 1901 is an agricultural pest and known vector of strawberry viruses. To better understand its biology and systematics, we performed a genomic analysis on C. fragaefolii collected from Quinalt strawberry plants from Pacific Grove, Monterey county, California, USA using Oxford Nanopore and Illumina sequencing. The resulting data were used to assemble the aphids complete mitogenome. The mitogenome of C. fragaefolii is 16,108 bp in length and contains 2 rRNA, 13 protein-coding, and 22 tRNA genes (GenBank accession number LC590896). The mitogenome is similar in content and organization to other Aphididae. Phylogenetic analysis of the C. fragaefolii mitogenome resolved it in a fully supported clade in the tribe Macrosiphini. Analysis of the cox1 barcode sequence of C. fragaefolii from California found exact and nearly identical sequences to C. fragaefolii and Chaetosiphon thomasi Hille Ris Lambers, 1953, suggesting the two species are conspecific. Taylor & Francis 2021-07-19 /pmc/articles/PMC8291070/ /pubmed/34350347 http://dx.doi.org/10.1080/23802359.2021.1915206 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
| spellingShingle | Mitogenome Announcement Acosta, Miguel Alcantar, Diana Alier-Reyes, Ivan Alvarez, Carlos Arroyo, Crystal B. Calderon, David Cardenas, David Castro, Alejandro R. Companion, Janelle K. Constante, Cristian Diaz Telles, Evelyn S. Fletes, Gabriel Gama, Fatima C. Garcia Perez, Celia Garcia, Abigail Garcia, Bailey Gutierrez, Brandon S. Guzman, Karina L. Hernandez, Cecilia Hughey, Jeffery R. Flores, Monica Ibarra Jacobo, Adilene I. Lopez, Brianna Lopez-De Leon, Norma C. Martinez, Jaden D. Mendoza, Nayelli Perez, Kimberly Perez, Lucio J. Perez-Moreno, Milagros Pineda, Caitlin D. Pinedo, Elizabeth Portillo, Julissa G. Rico, Anais Ruiz, Laura V. Serrano, Genevie M. Sheldon, Kalia M. Terada, Hiroki Trujillo, Victoria A. Vazquez-Ramos, Clarissa Wang, Frank Flora, Dawn Zavala, Felipe G. The complete mitochondrial genome of the strawberry aphid Chaetosiphon fragaefolii Cockerell, 1901 (Hemiptera: Aphididae) from California, USA |
| title | The complete mitochondrial genome of the strawberry aphid Chaetosiphon fragaefolii Cockerell, 1901 (Hemiptera: Aphididae) from California, USA |
| title_full | The complete mitochondrial genome of the strawberry aphid Chaetosiphon fragaefolii Cockerell, 1901 (Hemiptera: Aphididae) from California, USA |
| title_fullStr | The complete mitochondrial genome of the strawberry aphid Chaetosiphon fragaefolii Cockerell, 1901 (Hemiptera: Aphididae) from California, USA |
| title_full_unstemmed | The complete mitochondrial genome of the strawberry aphid Chaetosiphon fragaefolii Cockerell, 1901 (Hemiptera: Aphididae) from California, USA |
| title_short | The complete mitochondrial genome of the strawberry aphid Chaetosiphon fragaefolii Cockerell, 1901 (Hemiptera: Aphididae) from California, USA |
| title_sort | complete mitochondrial genome of the strawberry aphid chaetosiphon fragaefolii cockerell, 1901 (hemiptera: aphididae) from california, usa |
| topic | Mitogenome Announcement |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8291070/ https://www.ncbi.nlm.nih.gov/pubmed/34350347 http://dx.doi.org/10.1080/23802359.2021.1915206 |
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