Cargando…

Improving low-temperature activity and thermostability of exo-inulinase InuAGN25 on the basis of increasing rigidity of the terminus and flexibility of the catalytic domain

Enzymes displaying high activity at low temperatures and good thermostability are attracting attention in many studies. However, improving low-temperature activity along with the thermostability of enzymes remains challenging. In this study, the mutant Mut8S, including eight sites (N61E, K156R, P236...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Rui, He, Limei, Shen, Jidong, Miao, Ying, Tang, Xianghua, Wu, Qian, Zhou, Junpei, Huang, Zunxi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8291790/
https://www.ncbi.nlm.nih.gov/pubmed/33131413
http://dx.doi.org/10.1080/21655979.2020.1837476
_version_ 1783724709066571776
author Zhang, Rui
He, Limei
Shen, Jidong
Miao, Ying
Tang, Xianghua
Wu, Qian
Zhou, Junpei
Huang, Zunxi
author_facet Zhang, Rui
He, Limei
Shen, Jidong
Miao, Ying
Tang, Xianghua
Wu, Qian
Zhou, Junpei
Huang, Zunxi
author_sort Zhang, Rui
collection PubMed
description Enzymes displaying high activity at low temperatures and good thermostability are attracting attention in many studies. However, improving low-temperature activity along with the thermostability of enzymes remains challenging. In this study, the mutant Mut8S, including eight sites (N61E, K156R, P236E, T243K, D268E, T277D, Q390K, and R409D) mutated from the exo-inulinase InuAGN25, was designed on the basis of increasing the number of salt bridges through comparison between the low-temperature-active InuAGN25 and thermophilic exo-inulinases. The recombinant Mut8S, which was expressed in Escherichia coli, was digested by human rhinovirus 3 C protease to remove the amino acid fusion sequence at N-terminus, producing RfsMut8S. Compared with wild-type RfsMInuAGN25, the mutant RfsMut8S showed (1) lower root mean square deviation values, (2) lower root mean square fluctuation (RMSF) values of residues in six regions of the N and C termini but higher RMSF values in five regions of the catalytic pocket, (3) higher activity at 0–40°C, and (4) better thermostability at 50°C. This study proposes a way to increase low-temperature activity along with a thermostability improvement of exo-inulinase on the basis of increasing the rigidity of the terminus and the flexibility of the catalytic domain. These findings may prove useful in formulating rational designs for increasing the thermal performance of enzymes.
format Online
Article
Text
id pubmed-8291790
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-82917902021-09-01 Improving low-temperature activity and thermostability of exo-inulinase InuAGN25 on the basis of increasing rigidity of the terminus and flexibility of the catalytic domain Zhang, Rui He, Limei Shen, Jidong Miao, Ying Tang, Xianghua Wu, Qian Zhou, Junpei Huang, Zunxi Bioengineered Research Paper Enzymes displaying high activity at low temperatures and good thermostability are attracting attention in many studies. However, improving low-temperature activity along with the thermostability of enzymes remains challenging. In this study, the mutant Mut8S, including eight sites (N61E, K156R, P236E, T243K, D268E, T277D, Q390K, and R409D) mutated from the exo-inulinase InuAGN25, was designed on the basis of increasing the number of salt bridges through comparison between the low-temperature-active InuAGN25 and thermophilic exo-inulinases. The recombinant Mut8S, which was expressed in Escherichia coli, was digested by human rhinovirus 3 C protease to remove the amino acid fusion sequence at N-terminus, producing RfsMut8S. Compared with wild-type RfsMInuAGN25, the mutant RfsMut8S showed (1) lower root mean square deviation values, (2) lower root mean square fluctuation (RMSF) values of residues in six regions of the N and C termini but higher RMSF values in five regions of the catalytic pocket, (3) higher activity at 0–40°C, and (4) better thermostability at 50°C. This study proposes a way to increase low-temperature activity along with a thermostability improvement of exo-inulinase on the basis of increasing the rigidity of the terminus and the flexibility of the catalytic domain. These findings may prove useful in formulating rational designs for increasing the thermal performance of enzymes. Taylor & Francis 2020-10-31 /pmc/articles/PMC8291790/ /pubmed/33131413 http://dx.doi.org/10.1080/21655979.2020.1837476 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Paper
Zhang, Rui
He, Limei
Shen, Jidong
Miao, Ying
Tang, Xianghua
Wu, Qian
Zhou, Junpei
Huang, Zunxi
Improving low-temperature activity and thermostability of exo-inulinase InuAGN25 on the basis of increasing rigidity of the terminus and flexibility of the catalytic domain
title Improving low-temperature activity and thermostability of exo-inulinase InuAGN25 on the basis of increasing rigidity of the terminus and flexibility of the catalytic domain
title_full Improving low-temperature activity and thermostability of exo-inulinase InuAGN25 on the basis of increasing rigidity of the terminus and flexibility of the catalytic domain
title_fullStr Improving low-temperature activity and thermostability of exo-inulinase InuAGN25 on the basis of increasing rigidity of the terminus and flexibility of the catalytic domain
title_full_unstemmed Improving low-temperature activity and thermostability of exo-inulinase InuAGN25 on the basis of increasing rigidity of the terminus and flexibility of the catalytic domain
title_short Improving low-temperature activity and thermostability of exo-inulinase InuAGN25 on the basis of increasing rigidity of the terminus and flexibility of the catalytic domain
title_sort improving low-temperature activity and thermostability of exo-inulinase inuagn25 on the basis of increasing rigidity of the terminus and flexibility of the catalytic domain
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8291790/
https://www.ncbi.nlm.nih.gov/pubmed/33131413
http://dx.doi.org/10.1080/21655979.2020.1837476
work_keys_str_mv AT zhangrui improvinglowtemperatureactivityandthermostabilityofexoinulinaseinuagn25onthebasisofincreasingrigidityoftheterminusandflexibilityofthecatalyticdomain
AT helimei improvinglowtemperatureactivityandthermostabilityofexoinulinaseinuagn25onthebasisofincreasingrigidityoftheterminusandflexibilityofthecatalyticdomain
AT shenjidong improvinglowtemperatureactivityandthermostabilityofexoinulinaseinuagn25onthebasisofincreasingrigidityoftheterminusandflexibilityofthecatalyticdomain
AT miaoying improvinglowtemperatureactivityandthermostabilityofexoinulinaseinuagn25onthebasisofincreasingrigidityoftheterminusandflexibilityofthecatalyticdomain
AT tangxianghua improvinglowtemperatureactivityandthermostabilityofexoinulinaseinuagn25onthebasisofincreasingrigidityoftheterminusandflexibilityofthecatalyticdomain
AT wuqian improvinglowtemperatureactivityandthermostabilityofexoinulinaseinuagn25onthebasisofincreasingrigidityoftheterminusandflexibilityofthecatalyticdomain
AT zhoujunpei improvinglowtemperatureactivityandthermostabilityofexoinulinaseinuagn25onthebasisofincreasingrigidityoftheterminusandflexibilityofthecatalyticdomain
AT huangzunxi improvinglowtemperatureactivityandthermostabilityofexoinulinaseinuagn25onthebasisofincreasingrigidityoftheterminusandflexibilityofthecatalyticdomain