Cargando…

Characteristics of immune cell infiltration and associated diagnostic biomarkers in ulcerative colitis: results from bioinformatics analysis

Ulcerative colitis (UC) is a type of refractory and recurrent inflammatory disorder that occurs in colon and rectum. Immune cell infiltration plays a critical role in UC progression; therefore, this study aims to explore potential biomarkers for UC and to analyze characteristics of immune cell infil...

Descripción completa

Detalles Bibliográficos
Autores principales: Xue, Guohui, Hua, Lin, Zhou, Nanjin, Li, Junming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8291880/
https://www.ncbi.nlm.nih.gov/pubmed/33323040
http://dx.doi.org/10.1080/21655979.2020.1863016
_version_ 1783724731371880448
author Xue, Guohui
Hua, Lin
Zhou, Nanjin
Li, Junming
author_facet Xue, Guohui
Hua, Lin
Zhou, Nanjin
Li, Junming
author_sort Xue, Guohui
collection PubMed
description Ulcerative colitis (UC) is a type of refractory and recurrent inflammatory disorder that occurs in colon and rectum. Immune cell infiltration plays a critical role in UC progression; therefore, this study aims to explore potential biomarkers for UC and to analyze characteristics of immune cell infiltration based on the bioinformatic analysis. In this study, 248 differentially expressed genes (DEGs) were screened, and the top 20 immune-related hub genes and pathways were assessed. Moreover, four candidate diagnostic biomarkers (DPP10, S100P, AMPD1, and ASS1) were identified and validated. Immune cell infiltration analysis identified 13 differentially infiltrated immune cells (IICs) in UC samples compared to normal samples, and the result showed that two IICs only expressed in UC samples. In addition, the present research found that DPP10 was negatively correlated with neutrophils, S100P exhibited a positive correlation with resting CD4 memory T cells, AMPD1 was positively correlated with M2 macrophages, and ASS1 was inversely associated with neutrophils and positively related to CD8 T cells. Taken together, these findings indicated that DPP10, S100P, AMPD1, and ASS1 may act as diagnostic biomarkers for UC, and that differential IICs may help to illustrate the progression of UC.
format Online
Article
Text
id pubmed-8291880
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-82918802021-09-01 Characteristics of immune cell infiltration and associated diagnostic biomarkers in ulcerative colitis: results from bioinformatics analysis Xue, Guohui Hua, Lin Zhou, Nanjin Li, Junming Bioengineered Research Paper Ulcerative colitis (UC) is a type of refractory and recurrent inflammatory disorder that occurs in colon and rectum. Immune cell infiltration plays a critical role in UC progression; therefore, this study aims to explore potential biomarkers for UC and to analyze characteristics of immune cell infiltration based on the bioinformatic analysis. In this study, 248 differentially expressed genes (DEGs) were screened, and the top 20 immune-related hub genes and pathways were assessed. Moreover, four candidate diagnostic biomarkers (DPP10, S100P, AMPD1, and ASS1) were identified and validated. Immune cell infiltration analysis identified 13 differentially infiltrated immune cells (IICs) in UC samples compared to normal samples, and the result showed that two IICs only expressed in UC samples. In addition, the present research found that DPP10 was negatively correlated with neutrophils, S100P exhibited a positive correlation with resting CD4 memory T cells, AMPD1 was positively correlated with M2 macrophages, and ASS1 was inversely associated with neutrophils and positively related to CD8 T cells. Taken together, these findings indicated that DPP10, S100P, AMPD1, and ASS1 may act as diagnostic biomarkers for UC, and that differential IICs may help to illustrate the progression of UC. Taylor & Francis 2021-01-11 /pmc/articles/PMC8291880/ /pubmed/33323040 http://dx.doi.org/10.1080/21655979.2020.1863016 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Paper
Xue, Guohui
Hua, Lin
Zhou, Nanjin
Li, Junming
Characteristics of immune cell infiltration and associated diagnostic biomarkers in ulcerative colitis: results from bioinformatics analysis
title Characteristics of immune cell infiltration and associated diagnostic biomarkers in ulcerative colitis: results from bioinformatics analysis
title_full Characteristics of immune cell infiltration and associated diagnostic biomarkers in ulcerative colitis: results from bioinformatics analysis
title_fullStr Characteristics of immune cell infiltration and associated diagnostic biomarkers in ulcerative colitis: results from bioinformatics analysis
title_full_unstemmed Characteristics of immune cell infiltration and associated diagnostic biomarkers in ulcerative colitis: results from bioinformatics analysis
title_short Characteristics of immune cell infiltration and associated diagnostic biomarkers in ulcerative colitis: results from bioinformatics analysis
title_sort characteristics of immune cell infiltration and associated diagnostic biomarkers in ulcerative colitis: results from bioinformatics analysis
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8291880/
https://www.ncbi.nlm.nih.gov/pubmed/33323040
http://dx.doi.org/10.1080/21655979.2020.1863016
work_keys_str_mv AT xueguohui characteristicsofimmunecellinfiltrationandassociateddiagnosticbiomarkersinulcerativecolitisresultsfrombioinformaticsanalysis
AT hualin characteristicsofimmunecellinfiltrationandassociateddiagnosticbiomarkersinulcerativecolitisresultsfrombioinformaticsanalysis
AT zhounanjin characteristicsofimmunecellinfiltrationandassociateddiagnosticbiomarkersinulcerativecolitisresultsfrombioinformaticsanalysis
AT lijunming characteristicsofimmunecellinfiltrationandassociateddiagnosticbiomarkersinulcerativecolitisresultsfrombioinformaticsanalysis