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Predicting critical state after COVID-19 diagnosis: model development using a large US electronic health record dataset

As the COVID-19 pandemic is challenging healthcare systems worldwide, early identification of patients with a high risk of complication is crucial. We present a prognostic model predicting critical state within 28 days following COVID-19 diagnosis trained on data from US electronic health records (I...

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Autores principales: Rinderknecht, Mike D., Klopfenstein, Yannick
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8292360/
https://www.ncbi.nlm.nih.gov/pubmed/34285316
http://dx.doi.org/10.1038/s41746-021-00482-9
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author Rinderknecht, Mike D.
Klopfenstein, Yannick
author_facet Rinderknecht, Mike D.
Klopfenstein, Yannick
author_sort Rinderknecht, Mike D.
collection PubMed
description As the COVID-19 pandemic is challenging healthcare systems worldwide, early identification of patients with a high risk of complication is crucial. We present a prognostic model predicting critical state within 28 days following COVID-19 diagnosis trained on data from US electronic health records (IBM Explorys), including demographics, comorbidities, symptoms, and hospitalization. Out of 15753 COVID-19 patients, 2050 went into critical state or deceased. Non-random train-test splits by time were repeated 100 times and led to a ROC AUC of 0.861 [0.838, 0.883] and a precision-recall AUC of 0.434 [0.414, 0.485] (median and interquartile range). The interpretability analysis confirmed evidence on major risk factors (e.g., older age, higher BMI, male gender, diabetes, and cardiovascular disease) in an efficient way compared to clinical studies, demonstrating the model validity. Such personalized predictions could enable fine-graded risk stratification for optimized care management.
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spelling pubmed-82923602021-07-23 Predicting critical state after COVID-19 diagnosis: model development using a large US electronic health record dataset Rinderknecht, Mike D. Klopfenstein, Yannick NPJ Digit Med Article As the COVID-19 pandemic is challenging healthcare systems worldwide, early identification of patients with a high risk of complication is crucial. We present a prognostic model predicting critical state within 28 days following COVID-19 diagnosis trained on data from US electronic health records (IBM Explorys), including demographics, comorbidities, symptoms, and hospitalization. Out of 15753 COVID-19 patients, 2050 went into critical state or deceased. Non-random train-test splits by time were repeated 100 times and led to a ROC AUC of 0.861 [0.838, 0.883] and a precision-recall AUC of 0.434 [0.414, 0.485] (median and interquartile range). The interpretability analysis confirmed evidence on major risk factors (e.g., older age, higher BMI, male gender, diabetes, and cardiovascular disease) in an efficient way compared to clinical studies, demonstrating the model validity. Such personalized predictions could enable fine-graded risk stratification for optimized care management. Nature Publishing Group UK 2021-07-20 /pmc/articles/PMC8292360/ /pubmed/34285316 http://dx.doi.org/10.1038/s41746-021-00482-9 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Rinderknecht, Mike D.
Klopfenstein, Yannick
Predicting critical state after COVID-19 diagnosis: model development using a large US electronic health record dataset
title Predicting critical state after COVID-19 diagnosis: model development using a large US electronic health record dataset
title_full Predicting critical state after COVID-19 diagnosis: model development using a large US electronic health record dataset
title_fullStr Predicting critical state after COVID-19 diagnosis: model development using a large US electronic health record dataset
title_full_unstemmed Predicting critical state after COVID-19 diagnosis: model development using a large US electronic health record dataset
title_short Predicting critical state after COVID-19 diagnosis: model development using a large US electronic health record dataset
title_sort predicting critical state after covid-19 diagnosis: model development using a large us electronic health record dataset
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8292360/
https://www.ncbi.nlm.nih.gov/pubmed/34285316
http://dx.doi.org/10.1038/s41746-021-00482-9
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