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Noise reduction in X-ray photon correlation spectroscopy with convolutional neural networks encoder–decoder models
Like other experimental techniques, X-ray photon correlation spectroscopy is subject to various kinds of noise. Random and correlated fluctuations and heterogeneities can be present in a two-time correlation function and obscure the information about the intrinsic dynamics of a sample. Simultaneousl...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8292438/ https://www.ncbi.nlm.nih.gov/pubmed/34285272 http://dx.doi.org/10.1038/s41598-021-93747-y |
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author | Konstantinova, Tatiana Wiegart, Lutz Rakitin, Maksim DeGennaro, Anthony M. Barbour, Andi M. |
author_facet | Konstantinova, Tatiana Wiegart, Lutz Rakitin, Maksim DeGennaro, Anthony M. Barbour, Andi M. |
author_sort | Konstantinova, Tatiana |
collection | PubMed |
description | Like other experimental techniques, X-ray photon correlation spectroscopy is subject to various kinds of noise. Random and correlated fluctuations and heterogeneities can be present in a two-time correlation function and obscure the information about the intrinsic dynamics of a sample. Simultaneously addressing the disparate origins of noise in the experimental data is challenging. We propose a computational approach for improving the signal-to-noise ratio in two-time correlation functions that is based on convolutional neural network encoder–decoder (CNN-ED) models. Such models extract features from an image via convolutional layers, project them to a low dimensional space and then reconstruct a clean image from this reduced representation via transposed convolutional layers. Not only are ED models a general tool for random noise removal, but their application to low signal-to-noise data can enhance the data’s quantitative usage since they are able to learn the functional form of the signal. We demonstrate that the CNN-ED models trained on real-world experimental data help to effectively extract equilibrium dynamics’ parameters from two-time correlation functions, containing statistical noise and dynamic heterogeneities. Strategies for optimizing the models’ performance and their applicability limits are discussed. |
format | Online Article Text |
id | pubmed-8292438 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-82924382021-07-22 Noise reduction in X-ray photon correlation spectroscopy with convolutional neural networks encoder–decoder models Konstantinova, Tatiana Wiegart, Lutz Rakitin, Maksim DeGennaro, Anthony M. Barbour, Andi M. Sci Rep Article Like other experimental techniques, X-ray photon correlation spectroscopy is subject to various kinds of noise. Random and correlated fluctuations and heterogeneities can be present in a two-time correlation function and obscure the information about the intrinsic dynamics of a sample. Simultaneously addressing the disparate origins of noise in the experimental data is challenging. We propose a computational approach for improving the signal-to-noise ratio in two-time correlation functions that is based on convolutional neural network encoder–decoder (CNN-ED) models. Such models extract features from an image via convolutional layers, project them to a low dimensional space and then reconstruct a clean image from this reduced representation via transposed convolutional layers. Not only are ED models a general tool for random noise removal, but their application to low signal-to-noise data can enhance the data’s quantitative usage since they are able to learn the functional form of the signal. We demonstrate that the CNN-ED models trained on real-world experimental data help to effectively extract equilibrium dynamics’ parameters from two-time correlation functions, containing statistical noise and dynamic heterogeneities. Strategies for optimizing the models’ performance and their applicability limits are discussed. Nature Publishing Group UK 2021-07-20 /pmc/articles/PMC8292438/ /pubmed/34285272 http://dx.doi.org/10.1038/s41598-021-93747-y Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Konstantinova, Tatiana Wiegart, Lutz Rakitin, Maksim DeGennaro, Anthony M. Barbour, Andi M. Noise reduction in X-ray photon correlation spectroscopy with convolutional neural networks encoder–decoder models |
title | Noise reduction in X-ray photon correlation spectroscopy with convolutional neural networks encoder–decoder models |
title_full | Noise reduction in X-ray photon correlation spectroscopy with convolutional neural networks encoder–decoder models |
title_fullStr | Noise reduction in X-ray photon correlation spectroscopy with convolutional neural networks encoder–decoder models |
title_full_unstemmed | Noise reduction in X-ray photon correlation spectroscopy with convolutional neural networks encoder–decoder models |
title_short | Noise reduction in X-ray photon correlation spectroscopy with convolutional neural networks encoder–decoder models |
title_sort | noise reduction in x-ray photon correlation spectroscopy with convolutional neural networks encoder–decoder models |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8292438/ https://www.ncbi.nlm.nih.gov/pubmed/34285272 http://dx.doi.org/10.1038/s41598-021-93747-y |
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