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SANTIA: a Matlab-based open-source toolbox for artifact detection and removal from extracellular neuronal signals

Neuronal signals generally represent activation of the neuronal networks and give insights into brain functionalities. They are considered as fingerprints of actions and their processing across different structures of the brain. These recordings generate a large volume of data that are susceptible t...

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Autores principales: Fabietti, Marcos, Mahmud, Mufti, Lotfi, Ahmad, Kaiser , M. Shamim, Averna, Alberto, Guggenmos, David J., Nudo, Randolph J., Chiappalone, Michela, Chen, Jianhui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8292498/
https://www.ncbi.nlm.nih.gov/pubmed/34283328
http://dx.doi.org/10.1186/s40708-021-00135-3
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author Fabietti, Marcos
Mahmud, Mufti
Lotfi, Ahmad
Kaiser , M. Shamim
Averna, Alberto
Guggenmos, David J.
Nudo, Randolph J.
Chiappalone, Michela
Chen, Jianhui
author_facet Fabietti, Marcos
Mahmud, Mufti
Lotfi, Ahmad
Kaiser , M. Shamim
Averna, Alberto
Guggenmos, David J.
Nudo, Randolph J.
Chiappalone, Michela
Chen, Jianhui
author_sort Fabietti, Marcos
collection PubMed
description Neuronal signals generally represent activation of the neuronal networks and give insights into brain functionalities. They are considered as fingerprints of actions and their processing across different structures of the brain. These recordings generate a large volume of data that are susceptible to noise and artifacts. Therefore, the review of these data to ensure high quality by automatically detecting and removing the artifacts is imperative. Toward this aim, this work proposes a custom-developed automatic artifact removal toolbox named, SANTIA (SigMate Advanced: a Novel Tool for Identification of Artifacts in Neuronal Signals). Developed in Matlab, SANTIA is an open-source toolbox that applies neural network-based machine learning techniques to label and train models to detect artifacts from the invasive neuronal signals known as local field potentials.
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spelling pubmed-82924982021-08-05 SANTIA: a Matlab-based open-source toolbox for artifact detection and removal from extracellular neuronal signals Fabietti, Marcos Mahmud, Mufti Lotfi, Ahmad Kaiser , M. Shamim Averna, Alberto Guggenmos, David J. Nudo, Randolph J. Chiappalone, Michela Chen, Jianhui Brain Inform Research Neuronal signals generally represent activation of the neuronal networks and give insights into brain functionalities. They are considered as fingerprints of actions and their processing across different structures of the brain. These recordings generate a large volume of data that are susceptible to noise and artifacts. Therefore, the review of these data to ensure high quality by automatically detecting and removing the artifacts is imperative. Toward this aim, this work proposes a custom-developed automatic artifact removal toolbox named, SANTIA (SigMate Advanced: a Novel Tool for Identification of Artifacts in Neuronal Signals). Developed in Matlab, SANTIA is an open-source toolbox that applies neural network-based machine learning techniques to label and train models to detect artifacts from the invasive neuronal signals known as local field potentials. Springer Berlin Heidelberg 2021-07-20 /pmc/articles/PMC8292498/ /pubmed/34283328 http://dx.doi.org/10.1186/s40708-021-00135-3 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Research
Fabietti, Marcos
Mahmud, Mufti
Lotfi, Ahmad
Kaiser , M. Shamim
Averna, Alberto
Guggenmos, David J.
Nudo, Randolph J.
Chiappalone, Michela
Chen, Jianhui
SANTIA: a Matlab-based open-source toolbox for artifact detection and removal from extracellular neuronal signals
title SANTIA: a Matlab-based open-source toolbox for artifact detection and removal from extracellular neuronal signals
title_full SANTIA: a Matlab-based open-source toolbox for artifact detection and removal from extracellular neuronal signals
title_fullStr SANTIA: a Matlab-based open-source toolbox for artifact detection and removal from extracellular neuronal signals
title_full_unstemmed SANTIA: a Matlab-based open-source toolbox for artifact detection and removal from extracellular neuronal signals
title_short SANTIA: a Matlab-based open-source toolbox for artifact detection and removal from extracellular neuronal signals
title_sort santia: a matlab-based open-source toolbox for artifact detection and removal from extracellular neuronal signals
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8292498/
https://www.ncbi.nlm.nih.gov/pubmed/34283328
http://dx.doi.org/10.1186/s40708-021-00135-3
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