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A multi‐data ensemble approach for predicting woodland type distribution: Oak woodland in Britain

Interactions between soil, topography, and climatic site factors can exacerbate and/or alleviate the vulnerability of oak woodland to climate change. Reducing climate‐related impacts on oak woodland habitats and ecosystems through adaptation management requires knowledge of different site interactio...

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Autores principales: Ray, Duncan, Marchi, Maurizio, Rattey, Andrew, Broome, Alice
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8293729/
https://www.ncbi.nlm.nih.gov/pubmed/34306632
http://dx.doi.org/10.1002/ece3.7752
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author Ray, Duncan
Marchi, Maurizio
Rattey, Andrew
Broome, Alice
author_facet Ray, Duncan
Marchi, Maurizio
Rattey, Andrew
Broome, Alice
author_sort Ray, Duncan
collection PubMed
description Interactions between soil, topography, and climatic site factors can exacerbate and/or alleviate the vulnerability of oak woodland to climate change. Reducing climate‐related impacts on oak woodland habitats and ecosystems through adaptation management requires knowledge of different site interactions in relation to species tolerance. In Britain, the required thematic detail of woodland type is unavailable from digital maps. A species distribution model (SDM) ensemble, using biomod2 algorithms, was used to predict oak woodland. The model was cross‐validated (50%:50% ‐ training:testing) 30 times, with each of 15 random sets of absence data, matching the size of presence data, to maximize environmental variation while maintaining data prevalence. Four biomod2 algorithms provided stable and consistent TSS‐weighted ensemble mean results predicting oak woodland as a probability raster. Biophysical data from the Ecological Site Classification (forest site classification) for Britain were used to characterize oak woodland sites. Several forest datasets were used, each with merits and weaknesses: public forest estate subcompartment database map (PFE map) for oak‐stand locations as a training dataset; the national forest inventory (NFI) “published regional reports” of oak woodland area; and an “NFI map” of indicative forest type broad habitat. Broadleaved woodland polygons of the NFI map were filled with the biomod2 oak woodland probability raster. Ranked pixels were selected up to the published NFI regional area estimate of oak woodland and matched to the elevation distribution of oak woodland stands, from “NFI survey” sample squares. Validation using separate oak woodland data showed that the elevation filter significantly improved the accuracy of predictions from 55% (p = .53) to 83% coincidence success rate (p < .0001). The biomod2 ensemble, with masking and filtering, produced a predicted oak woodland map, from which site characteristics will be used in climate change interaction studies, supporting adaptation management recommendations for forest policy and practice.
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spelling pubmed-82937292021-07-23 A multi‐data ensemble approach for predicting woodland type distribution: Oak woodland in Britain Ray, Duncan Marchi, Maurizio Rattey, Andrew Broome, Alice Ecol Evol Original Research Interactions between soil, topography, and climatic site factors can exacerbate and/or alleviate the vulnerability of oak woodland to climate change. Reducing climate‐related impacts on oak woodland habitats and ecosystems through adaptation management requires knowledge of different site interactions in relation to species tolerance. In Britain, the required thematic detail of woodland type is unavailable from digital maps. A species distribution model (SDM) ensemble, using biomod2 algorithms, was used to predict oak woodland. The model was cross‐validated (50%:50% ‐ training:testing) 30 times, with each of 15 random sets of absence data, matching the size of presence data, to maximize environmental variation while maintaining data prevalence. Four biomod2 algorithms provided stable and consistent TSS‐weighted ensemble mean results predicting oak woodland as a probability raster. Biophysical data from the Ecological Site Classification (forest site classification) for Britain were used to characterize oak woodland sites. Several forest datasets were used, each with merits and weaknesses: public forest estate subcompartment database map (PFE map) for oak‐stand locations as a training dataset; the national forest inventory (NFI) “published regional reports” of oak woodland area; and an “NFI map” of indicative forest type broad habitat. Broadleaved woodland polygons of the NFI map were filled with the biomod2 oak woodland probability raster. Ranked pixels were selected up to the published NFI regional area estimate of oak woodland and matched to the elevation distribution of oak woodland stands, from “NFI survey” sample squares. Validation using separate oak woodland data showed that the elevation filter significantly improved the accuracy of predictions from 55% (p = .53) to 83% coincidence success rate (p < .0001). The biomod2 ensemble, with masking and filtering, produced a predicted oak woodland map, from which site characteristics will be used in climate change interaction studies, supporting adaptation management recommendations for forest policy and practice. John Wiley and Sons Inc. 2021-06-21 /pmc/articles/PMC8293729/ /pubmed/34306632 http://dx.doi.org/10.1002/ece3.7752 Text en © 2021 Crown copyright. Ecology and Evolution published by John Wiley & Sons Ltd. This article is published with the permission of the Controller of HMSO and the Queen's Printer for Scotland. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Ray, Duncan
Marchi, Maurizio
Rattey, Andrew
Broome, Alice
A multi‐data ensemble approach for predicting woodland type distribution: Oak woodland in Britain
title A multi‐data ensemble approach for predicting woodland type distribution: Oak woodland in Britain
title_full A multi‐data ensemble approach for predicting woodland type distribution: Oak woodland in Britain
title_fullStr A multi‐data ensemble approach for predicting woodland type distribution: Oak woodland in Britain
title_full_unstemmed A multi‐data ensemble approach for predicting woodland type distribution: Oak woodland in Britain
title_short A multi‐data ensemble approach for predicting woodland type distribution: Oak woodland in Britain
title_sort multi‐data ensemble approach for predicting woodland type distribution: oak woodland in britain
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8293729/
https://www.ncbi.nlm.nih.gov/pubmed/34306632
http://dx.doi.org/10.1002/ece3.7752
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