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Bioinformatics prediction of differential miRNAs in non-small cell lung cancer
BACKGROUND: Non-small cell lung cancer (NSCLC) accounts for 85% of all lung cancers. The drug resistance of NSCLC has clinically increased. This study aimed to screen miRNAs associated with NSCLC using bioinformatics analysis. We hope that the screened miRNA can provide a research direction for the...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8294502/ https://www.ncbi.nlm.nih.gov/pubmed/34288959 http://dx.doi.org/10.1371/journal.pone.0254854 |
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author | Xiao, Kui Liu, Shenggang Xiao, Yijia Wang, Yang Zhu, Zhiruo Wang, Yaohui Tong, De Jiang, Jiehan |
author_facet | Xiao, Kui Liu, Shenggang Xiao, Yijia Wang, Yang Zhu, Zhiruo Wang, Yaohui Tong, De Jiang, Jiehan |
author_sort | Xiao, Kui |
collection | PubMed |
description | BACKGROUND: Non-small cell lung cancer (NSCLC) accounts for 85% of all lung cancers. The drug resistance of NSCLC has clinically increased. This study aimed to screen miRNAs associated with NSCLC using bioinformatics analysis. We hope that the screened miRNA can provide a research direction for the subsequent treatment of NSCLC. METHODS: We screened out the common miRNAs after compared the NSCLC-related genes in the TCGA database and GEO database. Selected miRNA was performed ROC analysis, survival analysis, and enrichment analysis (GO term and KEGG pathway). RESULTS: A total of 21 miRNAs were screened in the two databases. And they were all highly expressed in normal and low in cancerous tissues. Hsa-mir-30a was selected by ROC analysis and survival analysis. Enrichment analysis showed that the function of hsa-mir-30a is mainly related to cell cycle regulation and drug metabolism. CONCLUSION: Our study found that hsa-mir-30a was differentially expressed in NSCLC, and it mainly affected NSCLC by regulating the cell cycle and drug metabolism. |
format | Online Article Text |
id | pubmed-8294502 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-82945022021-07-31 Bioinformatics prediction of differential miRNAs in non-small cell lung cancer Xiao, Kui Liu, Shenggang Xiao, Yijia Wang, Yang Zhu, Zhiruo Wang, Yaohui Tong, De Jiang, Jiehan PLoS One Research Article BACKGROUND: Non-small cell lung cancer (NSCLC) accounts for 85% of all lung cancers. The drug resistance of NSCLC has clinically increased. This study aimed to screen miRNAs associated with NSCLC using bioinformatics analysis. We hope that the screened miRNA can provide a research direction for the subsequent treatment of NSCLC. METHODS: We screened out the common miRNAs after compared the NSCLC-related genes in the TCGA database and GEO database. Selected miRNA was performed ROC analysis, survival analysis, and enrichment analysis (GO term and KEGG pathway). RESULTS: A total of 21 miRNAs were screened in the two databases. And they were all highly expressed in normal and low in cancerous tissues. Hsa-mir-30a was selected by ROC analysis and survival analysis. Enrichment analysis showed that the function of hsa-mir-30a is mainly related to cell cycle regulation and drug metabolism. CONCLUSION: Our study found that hsa-mir-30a was differentially expressed in NSCLC, and it mainly affected NSCLC by regulating the cell cycle and drug metabolism. Public Library of Science 2021-07-21 /pmc/articles/PMC8294502/ /pubmed/34288959 http://dx.doi.org/10.1371/journal.pone.0254854 Text en © 2021 Xiao et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Xiao, Kui Liu, Shenggang Xiao, Yijia Wang, Yang Zhu, Zhiruo Wang, Yaohui Tong, De Jiang, Jiehan Bioinformatics prediction of differential miRNAs in non-small cell lung cancer |
title | Bioinformatics prediction of differential miRNAs in non-small cell lung cancer |
title_full | Bioinformatics prediction of differential miRNAs in non-small cell lung cancer |
title_fullStr | Bioinformatics prediction of differential miRNAs in non-small cell lung cancer |
title_full_unstemmed | Bioinformatics prediction of differential miRNAs in non-small cell lung cancer |
title_short | Bioinformatics prediction of differential miRNAs in non-small cell lung cancer |
title_sort | bioinformatics prediction of differential mirnas in non-small cell lung cancer |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8294502/ https://www.ncbi.nlm.nih.gov/pubmed/34288959 http://dx.doi.org/10.1371/journal.pone.0254854 |
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