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Bioinformatics prediction of differential miRNAs in non-small cell lung cancer

BACKGROUND: Non-small cell lung cancer (NSCLC) accounts for 85% of all lung cancers. The drug resistance of NSCLC has clinically increased. This study aimed to screen miRNAs associated with NSCLC using bioinformatics analysis. We hope that the screened miRNA can provide a research direction for the...

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Autores principales: Xiao, Kui, Liu, Shenggang, Xiao, Yijia, Wang, Yang, Zhu, Zhiruo, Wang, Yaohui, Tong, De, Jiang, Jiehan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8294502/
https://www.ncbi.nlm.nih.gov/pubmed/34288959
http://dx.doi.org/10.1371/journal.pone.0254854
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author Xiao, Kui
Liu, Shenggang
Xiao, Yijia
Wang, Yang
Zhu, Zhiruo
Wang, Yaohui
Tong, De
Jiang, Jiehan
author_facet Xiao, Kui
Liu, Shenggang
Xiao, Yijia
Wang, Yang
Zhu, Zhiruo
Wang, Yaohui
Tong, De
Jiang, Jiehan
author_sort Xiao, Kui
collection PubMed
description BACKGROUND: Non-small cell lung cancer (NSCLC) accounts for 85% of all lung cancers. The drug resistance of NSCLC has clinically increased. This study aimed to screen miRNAs associated with NSCLC using bioinformatics analysis. We hope that the screened miRNA can provide a research direction for the subsequent treatment of NSCLC. METHODS: We screened out the common miRNAs after compared the NSCLC-related genes in the TCGA database and GEO database. Selected miRNA was performed ROC analysis, survival analysis, and enrichment analysis (GO term and KEGG pathway). RESULTS: A total of 21 miRNAs were screened in the two databases. And they were all highly expressed in normal and low in cancerous tissues. Hsa-mir-30a was selected by ROC analysis and survival analysis. Enrichment analysis showed that the function of hsa-mir-30a is mainly related to cell cycle regulation and drug metabolism. CONCLUSION: Our study found that hsa-mir-30a was differentially expressed in NSCLC, and it mainly affected NSCLC by regulating the cell cycle and drug metabolism.
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spelling pubmed-82945022021-07-31 Bioinformatics prediction of differential miRNAs in non-small cell lung cancer Xiao, Kui Liu, Shenggang Xiao, Yijia Wang, Yang Zhu, Zhiruo Wang, Yaohui Tong, De Jiang, Jiehan PLoS One Research Article BACKGROUND: Non-small cell lung cancer (NSCLC) accounts for 85% of all lung cancers. The drug resistance of NSCLC has clinically increased. This study aimed to screen miRNAs associated with NSCLC using bioinformatics analysis. We hope that the screened miRNA can provide a research direction for the subsequent treatment of NSCLC. METHODS: We screened out the common miRNAs after compared the NSCLC-related genes in the TCGA database and GEO database. Selected miRNA was performed ROC analysis, survival analysis, and enrichment analysis (GO term and KEGG pathway). RESULTS: A total of 21 miRNAs were screened in the two databases. And they were all highly expressed in normal and low in cancerous tissues. Hsa-mir-30a was selected by ROC analysis and survival analysis. Enrichment analysis showed that the function of hsa-mir-30a is mainly related to cell cycle regulation and drug metabolism. CONCLUSION: Our study found that hsa-mir-30a was differentially expressed in NSCLC, and it mainly affected NSCLC by regulating the cell cycle and drug metabolism. Public Library of Science 2021-07-21 /pmc/articles/PMC8294502/ /pubmed/34288959 http://dx.doi.org/10.1371/journal.pone.0254854 Text en © 2021 Xiao et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Xiao, Kui
Liu, Shenggang
Xiao, Yijia
Wang, Yang
Zhu, Zhiruo
Wang, Yaohui
Tong, De
Jiang, Jiehan
Bioinformatics prediction of differential miRNAs in non-small cell lung cancer
title Bioinformatics prediction of differential miRNAs in non-small cell lung cancer
title_full Bioinformatics prediction of differential miRNAs in non-small cell lung cancer
title_fullStr Bioinformatics prediction of differential miRNAs in non-small cell lung cancer
title_full_unstemmed Bioinformatics prediction of differential miRNAs in non-small cell lung cancer
title_short Bioinformatics prediction of differential miRNAs in non-small cell lung cancer
title_sort bioinformatics prediction of differential mirnas in non-small cell lung cancer
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8294502/
https://www.ncbi.nlm.nih.gov/pubmed/34288959
http://dx.doi.org/10.1371/journal.pone.0254854
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